RNA id: unassigned_transcript_338


Basic Information

Item Value
RNA id unassigned_transcript_338
length 74
RNA type tRNA
GC content 0.59
exon number 1
gene id trnam-cau_11
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20081504 ~ 20081577 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCTCGTTGGCGCAGTTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTCGTGAGTTCGAGCCTCACACGGGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44250 lncRNA upstream 98610 19981924 ~ 19982894 (+) True G29854
TU44246 lncRNA upstream 100781 19980489 ~ 19980723 (+) True G29852
TU44244 lncRNA upstream 102878 19978320 ~ 19978626 (+) True G29850
TU44237 lncRNA upstream 210589 19870420 ~ 19870915 (+) True G29844
TU44224 lncRNA upstream 295376 19731262 ~ 19786128 (+) True G29835
XR_006250696.1 lncRNA downstream 106407 20187984 ~ 20189971 (+) True LOC122343176
TU44291 lncRNA downstream 185259 20266836 ~ 20270112 (+) True G29883
TU44354 lncRNA downstream 242103 20323680 ~ 20442006 (+) True G29918
TU44355 lncRNA downstream 262787 20344364 ~ 20345054 (+) True LOC122342270
XR_006250693.1 lncRNA downstream 356088 20437665 ~ 20438508 (+) True LOC122343173
XM_043236062.1 mRNA upstream 35505 20043755 ~ 20045999 (+) True LOC122342262
XM_043237373.1 mRNA upstream 38051 20037933 ~ 20043453 (+) True LOC122343063
XM_043237387.1 mRNA upstream 331430 19745734 ~ 19750074 (+) True LOC122343071
XM_043237388.1 mRNA upstream 331430 19745734 ~ 19750074 (+) False LOC122343071
XM_043236059.1 mRNA upstream 375177 19703899 ~ 19706327 (+) True LOC122342253
XM_043236064.1 mRNA downstream 102076 20183653 ~ 20184498 (+) True LOC122342265
XM_043236067.1 mRNA downstream 262769 20344346 ~ 20346724 (+) False LOC122342270
XM_043237303.1 mRNA downstream 294833 20376410 ~ 20378106 (+) True LOC122343026
XM_043237447.1 mRNA downstream 309888 20391465 ~ 20392374 (+) True LOC122343110
XM_043236068.1 mRNA downstream 361769 20443346 ~ 20446136 (+) True LOC122342274
unassigned_transcript_335 other upstream 1804 20079627 ~ 20079700 (+) True trnam-cau_10
unassigned_transcript_332 other upstream 3687 20077742 ~ 20077817 (+) True trnam-cau_9
unassigned_transcript_330 other upstream 5434 20075993 ~ 20076070 (+) True trnae-cuc_7
unassigned_transcript_327 other upstream 7339 20074090 ~ 20074165 (+) True trnam-cau_8
unassigned_transcript_324 other upstream 9244 20072185 ~ 20072260 (+) True trnam-cau_7
unassigned_transcript_341 other downstream 1836 20083413 ~ 20083488 (+) True trnam-cau_12
unassigned_transcript_344 other downstream 3739 20085316 ~ 20085391 (+) True trnam-cau_13
unassigned_transcript_347 other downstream 5646 20087223 ~ 20087298 (+) True trnam-cau_14
unassigned_transcript_350 other downstream 7555 20089132 ~ 20089205 (+) True trnam-cau_15
unassigned_transcript_353 other downstream 9459 20091036 ~ 20091111 (+) True trnam-cau_16