RNA id: unassigned_transcript_377


Basic Information

Item Value
RNA id unassigned_transcript_377
length 74
RNA type tRNA
GC content 0.59
exon number 1
gene id trnam-cau_24
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20106282 ~ 20106355 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCTCGTTGGCGCAGTTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTCGTGAGTTCGAGCCTCACACGGGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44250 lncRNA upstream 123388 19981924 ~ 19982894 (+) True G29854
TU44246 lncRNA upstream 125559 19980489 ~ 19980723 (+) True G29852
TU44244 lncRNA upstream 127656 19978320 ~ 19978626 (+) True G29850
TU44237 lncRNA upstream 235367 19870420 ~ 19870915 (+) True G29844
TU44224 lncRNA upstream 320154 19731262 ~ 19786128 (+) True G29835
XR_006250696.1 lncRNA downstream 81629 20187984 ~ 20189971 (+) True LOC122343176
TU44291 lncRNA downstream 160481 20266836 ~ 20270112 (+) True G29883
TU44354 lncRNA downstream 217325 20323680 ~ 20442006 (+) True G29918
TU44355 lncRNA downstream 238009 20344364 ~ 20345054 (+) True LOC122342270
XR_006250693.1 lncRNA downstream 331310 20437665 ~ 20438508 (+) True LOC122343173
XM_043236062.1 mRNA upstream 60283 20043755 ~ 20045999 (+) True LOC122342262
XM_043237373.1 mRNA upstream 62829 20037933 ~ 20043453 (+) True LOC122343063
XM_043237387.1 mRNA upstream 356208 19745734 ~ 19750074 (+) True LOC122343071
XM_043237388.1 mRNA upstream 356208 19745734 ~ 19750074 (+) False LOC122343071
XM_043236059.1 mRNA upstream 399955 19703899 ~ 19706327 (+) True LOC122342253
XM_043236064.1 mRNA downstream 77298 20183653 ~ 20184498 (+) True LOC122342265
XM_043236067.1 mRNA downstream 237991 20344346 ~ 20346724 (+) False LOC122342270
XM_043237303.1 mRNA downstream 270055 20376410 ~ 20378106 (+) True LOC122343026
XM_043237447.1 mRNA downstream 285110 20391465 ~ 20392374 (+) True LOC122343110
XM_043236068.1 mRNA downstream 336991 20443346 ~ 20446136 (+) True LOC122342274
unassigned_transcript_374 other upstream 1831 20104376 ~ 20104451 (+) True trnam-cau_23
unassigned_transcript_371 other upstream 3738 20102471 ~ 20102544 (+) True trnam-cau_22
unassigned_transcript_368 other upstream 5643 20100566 ~ 20100639 (+) True trnam-cau_21
unassigned_transcript_365 other upstream 7547 20098662 ~ 20098735 (+) True trnam-cau_20
unassigned_transcript_362 other upstream 9449 20096758 ~ 20096833 (+) True trnam-cau_19
unassigned_transcript_379 other downstream 699 20107054 ~ 20107127 (+) True trnam-cau_25
XR_006250910.1 other downstream 141756 20248111 ~ 20248229 (+) True LOC122343930
TU44357 other downstream 261320 20367675 ~ 20368816 (+) True G29921
TU44410 other downstream 590317 20696672 ~ 20706846 (+) True G29961
TU44534 other downstream 1012207 21118562 ~ 21142831 (+) True G30058