RNA id: unassigned_transcript_378



Basic Information


Item Value
RNA id unassigned_transcript_378
length 83
RNA type tRNA
GC content 0.60
exon number 1
gene id trnal-aag_24
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20106877 ~ 20106959 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GTCaggatggccgagcggtctaaggcgctgcgttaaggtcgcagtctcctctggaggcgtgggttcgaatcccacttctgaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU44310 lncRNA downstream 97165 20000988 ~ 20009712 (-) True LOC122343146
TU44247 lncRNA downstream 126154 19980489 ~ 19980723 (-) True G29853
TU44245 lncRNA downstream 126518 19979957 ~ 19980359 (-) True G29851
TU44240 lncRNA downstream 130736 19975231 ~ 19976141 (-) True G29847
TU44243 lncRNA downstream 133430 19944294 ~ 19973447 (-) True G29849
TU44330 lncRNA upstream 35744 20142703 ~ 20144343 (-) False LOC122343174
XR_006250694.1 lncRNA upstream 35751 20142710 ~ 20144488 (-) True LOC122343174
TU44299 lncRNA upstream 38748 20145707 ~ 20146537 (-) True G29889
TU44303 lncRNA upstream 39655 20146614 ~ 20147299 (-) False G29889
TU44331 lncRNA upstream 45935 20152894 ~ 20153445 (-) True G29900
XM_043237503.1 mRNA downstream 103324 20001093 ~ 20003553 (-) False LOC122343146
XM_043237466.1 mRNA downstream 112281 19990684 ~ 19994596 (-) True LOC122343115
XM_043237364.1 mRNA downstream 116789 19981179 ~ 19990088 (-) False LOC122343058
XM_043236063.1 mRNA upstream 38096 20145055 ~ 20145645 (-) True LOC122342264
XM_043237446.1 mRNA upstream 40976 20147935 ~ 20150658 (-) False LOC122343109
XM_043237445.1 mRNA upstream 40976 20147935 ~ 20150658 (-) True LOC122343109
XM_043237490.1 mRNA upstream 50196 20157155 ~ 20160273 (-) True LOC122343134
XM_043237465.1 mRNA upstream 57750 20164709 ~ 20166414 (-) True LOC122343114
unassigned_transcript_376 other downstream 690 20106105 ~ 20106187 (-) True trnal-aag_23
unassigned_transcript_375 other downstream 1818 20104977 ~ 20105059 (-) True trnal-cag_23
unassigned_transcript_373 other downstream 2596 20104199 ~ 20104281 (-) True trnal-aag_22
unassigned_transcript_372 other downstream 3721 20103074 ~ 20103156 (-) True trnal-cag_22
unassigned_transcript_370 other downstream 4502 20102293 ~ 20102375 (-) True trnal-aag_21
unassigned_transcript_380 other upstream 698 20107657 ~ 20107739 (-) True trnal-cag_24
unassigned_transcript_381 other upstream 103597 20210556 ~ 20210638 (-) True trnal-aag_25
unassigned_transcript_382 other upstream 105503 20212462 ~ 20212543 (-) True trnal-aag_26
unassigned_transcript_383 other upstream 106282 20213241 ~ 20213322 (-) True trnal-cag_25
unassigned_transcript_384 other upstream 107290 20214249 ~ 20214332 (-) True trnal-aag_27