RNA id: unassigned_transcript_379


Basic Information

Item Value
RNA id unassigned_transcript_379
length 74
RNA type tRNA
GC content 0.59
exon number 1
gene id trnam-cau_25
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 20107054 ~ 20107127 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GCCTCGTTGGCGCAGTTAGGCAGCGCGTCAGTCTCATAATCTGAAGGTCGTGAGTTCGAGCCTCACACGGGGCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU44250 lncRNA upstream 124160 19981924 ~ 19982894 (+) True G29854
TU44246 lncRNA upstream 126331 19980489 ~ 19980723 (+) True G29852
TU44244 lncRNA upstream 128428 19978320 ~ 19978626 (+) True G29850
TU44237 lncRNA upstream 236139 19870420 ~ 19870915 (+) True G29844
TU44224 lncRNA upstream 320926 19731262 ~ 19786128 (+) True G29835
XR_006250696.1 lncRNA downstream 80857 20187984 ~ 20189971 (+) True LOC122343176
TU44291 lncRNA downstream 159709 20266836 ~ 20270112 (+) True G29883
TU44354 lncRNA downstream 216553 20323680 ~ 20442006 (+) True G29918
TU44355 lncRNA downstream 237237 20344364 ~ 20345054 (+) True LOC122342270
XR_006250693.1 lncRNA downstream 330538 20437665 ~ 20438508 (+) True LOC122343173
XM_043236062.1 mRNA upstream 61055 20043755 ~ 20045999 (+) True LOC122342262
XM_043237373.1 mRNA upstream 63601 20037933 ~ 20043453 (+) True LOC122343063
XM_043237387.1 mRNA upstream 356980 19745734 ~ 19750074 (+) True LOC122343071
XM_043237388.1 mRNA upstream 356980 19745734 ~ 19750074 (+) False LOC122343071
XM_043236059.1 mRNA upstream 400727 19703899 ~ 19706327 (+) True LOC122342253
XM_043236064.1 mRNA downstream 76526 20183653 ~ 20184498 (+) True LOC122342265
XM_043236067.1 mRNA downstream 237219 20344346 ~ 20346724 (+) False LOC122342270
XM_043237303.1 mRNA downstream 269283 20376410 ~ 20378106 (+) True LOC122343026
XM_043237447.1 mRNA downstream 284338 20391465 ~ 20392374 (+) True LOC122343110
XM_043236068.1 mRNA downstream 336219 20443346 ~ 20446136 (+) True LOC122342274
unassigned_transcript_377 other upstream 699 20106282 ~ 20106355 (+) True trnam-cau_24
unassigned_transcript_374 other upstream 2603 20104376 ~ 20104451 (+) True trnam-cau_23
unassigned_transcript_371 other upstream 4510 20102471 ~ 20102544 (+) True trnam-cau_22
unassigned_transcript_368 other upstream 6415 20100566 ~ 20100639 (+) True trnam-cau_21
unassigned_transcript_365 other upstream 8319 20098662 ~ 20098735 (+) True trnam-cau_20
XR_006250910.1 other downstream 140984 20248111 ~ 20248229 (+) True LOC122343930
TU44357 other downstream 260548 20367675 ~ 20368816 (+) True G29921
TU44410 other downstream 589545 20696672 ~ 20706846 (+) True G29961
TU44534 other downstream 1011435 21118562 ~ 21142831 (+) True G30058
TU44553 other downstream 1062122 21169249 ~ 21170595 (+) False LOC122342286