RNA id: unassigned_transcript_442


Basic Information

Item Value
RNA id unassigned_transcript_442
length 82
RNA type tRNA
GC content 0.59
exon number 1
gene id trnas-aga_19
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25886037 ~ 25886118 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtagtcgtggccgagtggttaaggcgatggactagaaatccattggggtctcccgccgcaggttcgaatcctgccgactacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46343 lncRNA upstream 68473 25817071 ~ 25817564 (+) True G31388
TU46346 lncRNA upstream 68582 25817031 ~ 25817455 (+) False G31388
TU46344 lncRNA upstream 68582 25817071 ~ 25817455 (+) False G31388
TU46335 lncRNA upstream 98136 25787380 ~ 25787901 (+) True G31380
TU46232 lncRNA upstream 200052 25680141 ~ 25685985 (+) True LOC122342771
XR_006250606.1 lncRNA downstream 30271 25916389 ~ 25917199 (+) True LOC122342592
XR_006250570.1 lncRNA downstream 275373 26161491 ~ 26163397 (+) True LOC122342452
TU46361 lncRNA downstream 550230 26436348 ~ 26436599 (+) True G31403
TU46362 lncRNA downstream 557388 26443506 ~ 26443991 (+) True G31404
TU46370 lncRNA downstream 592598 26478716 ~ 26478933 (+) True G31412
XM_043236264.1 mRNA upstream 157386 25711662 ~ 25728651 (+) True col9a3
XM_043237791.1 mRNA upstream 176400 25703831 ~ 25709637 (+) True ogfr
XM_043237792.1 mRNA upstream 176400 25703962 ~ 25709637 (+) False ogfr
XM_043236865.1 mRNA upstream 200165 25635051 ~ 25685872 (+) False LOC122342771
XM_043236137.1 mRNA downstream 88759 25974877 ~ 25977623 (+) True LOC122342357
XM_043236141.1 mRNA downstream 287076 26173194 ~ 26177618 (+) True LOC122342360
XM_043236142.1 mRNA downstream 496798 26382916 ~ 26427239 (+) True LOC122342362
XM_043236145.1 mRNA downstream 878835 26764953 ~ 26767173 (+) True LOC122342366
XM_043236148.1 mRNA downstream 1118583 27004701 ~ 27006306 (+) True LOC122342369
unassigned_transcript_441 other upstream 734 25885231 ~ 25885303 (+) True trnak-uuu_18
unassigned_transcript_440 other upstream 2575 25883382 ~ 25883462 (+) True trnas-aga_18
unassigned_transcript_439 other upstream 3388 25882577 ~ 25882649 (+) True trnak-uuu_17
unassigned_transcript_438 other upstream 16256 25869701 ~ 25869781 (+) True trnas-uga_17
unassigned_transcript_437 other upstream 16599 25869358 ~ 25869438 (+) True trnas-aga_17
unassigned_transcript_443 other downstream 261 25886379 ~ 25886460 (+) True trnas-uga_18
unassigned_transcript_444 other downstream 1770 25887888 ~ 25887960 (+) True trnak-uuu_19
unassigned_transcript_445 other downstream 2973 25889091 ~ 25889172 (+) True trnas-aga_20
unassigned_transcript_446 other downstream 5357 25891475 ~ 25891556 (+) True trnas-uga_19
unassigned_transcript_447 other downstream 6860 25892978 ~ 25893050 (+) True trnak-uuu_20