RNA id: unassigned_transcript_452


Basic Information

Item Value
RNA id unassigned_transcript_452
length 82
RNA type tRNA
GC content 0.59
exon number 1
gene id trnas-aga_23
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25899459 ~ 25899540 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtagtcgtggccgagtggttaaggcgatggactagaaatccattggggtctccccgcgcaggttcgaatcctgccgactacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46343 lncRNA upstream 81895 25817071 ~ 25817564 (+) True G31388
TU46346 lncRNA upstream 82004 25817031 ~ 25817455 (+) False G31388
TU46344 lncRNA upstream 82004 25817071 ~ 25817455 (+) False G31388
TU46335 lncRNA upstream 111558 25787380 ~ 25787901 (+) True G31380
TU46232 lncRNA upstream 213474 25680141 ~ 25685985 (+) True LOC122342771
XR_006250606.1 lncRNA downstream 16849 25916389 ~ 25917199 (+) True LOC122342592
XR_006250570.1 lncRNA downstream 261951 26161491 ~ 26163397 (+) True LOC122342452
TU46361 lncRNA downstream 536808 26436348 ~ 26436599 (+) True G31403
TU46362 lncRNA downstream 543966 26443506 ~ 26443991 (+) True G31404
TU46370 lncRNA downstream 579176 26478716 ~ 26478933 (+) True G31412
XM_043236264.1 mRNA upstream 170808 25711662 ~ 25728651 (+) True col9a3
XM_043237791.1 mRNA upstream 189822 25703831 ~ 25709637 (+) True ogfr
XM_043237792.1 mRNA upstream 189822 25703962 ~ 25709637 (+) False ogfr
XM_043236865.1 mRNA upstream 213587 25635051 ~ 25685872 (+) False LOC122342771
XM_043236137.1 mRNA downstream 75337 25974877 ~ 25977623 (+) True LOC122342357
XM_043236141.1 mRNA downstream 273654 26173194 ~ 26177618 (+) True LOC122342360
XM_043236142.1 mRNA downstream 483376 26382916 ~ 26427239 (+) True LOC122342362
XM_043236145.1 mRNA downstream 865413 26764953 ~ 26767173 (+) True LOC122342366
XM_043236148.1 mRNA downstream 1105161 27004701 ~ 27006306 (+) True LOC122342369
unassigned_transcript_451 other upstream 730 25898657 ~ 25898729 (+) True trnak-uuu_21
unassigned_transcript_450 other upstream 2247 25897131 ~ 25897212 (+) True trnas-uga_20
unassigned_transcript_449 other upstream 2594 25896785 ~ 25896865 (+) True trnas-aga_22
unassigned_transcript_448 other upstream 4877 25894502 ~ 25894582 (+) True trnas-aga_21
unassigned_transcript_447 other upstream 6409 25892978 ~ 25893050 (+) True trnak-uuu_20
unassigned_transcript_453 other downstream 263 25899803 ~ 25899883 (+) True trnas-uga_21
unassigned_transcript_454 other downstream 1764 25901304 ~ 25901376 (+) True trnak-uuu_22
unassigned_transcript_455 other downstream 2565 25902105 ~ 25902185 (+) True trnas-aga_24
unassigned_transcript_456 other downstream 2911 25902451 ~ 25902532 (+) True trnas-uga_22
unassigned_transcript_457 other downstream 4420 25903960 ~ 25904032 (+) True trnak-uuu_23