RNA id: unassigned_transcript_460


Basic Information

Item Value
RNA id unassigned_transcript_460
length 82
RNA type tRNA
GC content 0.59
exon number 1
gene id trnas-uga_23
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25907157 ~ 25907238 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtagtcgtggccgagaggttaaggcgatggacttgaaatccattggtgtctccccgcgcaggttcgaaccctgccgactacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46343 lncRNA upstream 89593 25817071 ~ 25817564 (+) True G31388
TU46346 lncRNA upstream 89702 25817031 ~ 25817455 (+) False G31388
TU46344 lncRNA upstream 89702 25817071 ~ 25817455 (+) False G31388
TU46335 lncRNA upstream 119256 25787380 ~ 25787901 (+) True G31380
TU46232 lncRNA upstream 221172 25680141 ~ 25685985 (+) True LOC122342771
XR_006250606.1 lncRNA downstream 9151 25916389 ~ 25917199 (+) True LOC122342592
XR_006250570.1 lncRNA downstream 254253 26161491 ~ 26163397 (+) True LOC122342452
TU46361 lncRNA downstream 529110 26436348 ~ 26436599 (+) True G31403
TU46362 lncRNA downstream 536268 26443506 ~ 26443991 (+) True G31404
TU46370 lncRNA downstream 571478 26478716 ~ 26478933 (+) True G31412
XM_043236264.1 mRNA upstream 178506 25711662 ~ 25728651 (+) True col9a3
XM_043237791.1 mRNA upstream 197520 25703831 ~ 25709637 (+) True ogfr
XM_043237792.1 mRNA upstream 197520 25703962 ~ 25709637 (+) False ogfr
XM_043236865.1 mRNA upstream 221285 25635051 ~ 25685872 (+) False LOC122342771
XM_043236137.1 mRNA downstream 67639 25974877 ~ 25977623 (+) True LOC122342357
XM_043236141.1 mRNA downstream 265956 26173194 ~ 26177618 (+) True LOC122342360
XM_043236142.1 mRNA downstream 475678 26382916 ~ 26427239 (+) True LOC122342362
XM_043236145.1 mRNA downstream 857715 26764953 ~ 26767173 (+) True LOC122342366
XM_043236148.1 mRNA downstream 1097463 27004701 ~ 27006306 (+) True LOC122342369
unassigned_transcript_459 other upstream 463 25906622 ~ 25906694 (+) True trnak-uuu_24
unassigned_transcript_458 other upstream 2306 25904770 ~ 25904851 (+) True trnas-aga_25
unassigned_transcript_457 other upstream 3125 25903960 ~ 25904032 (+) True trnak-uuu_23
unassigned_transcript_456 other upstream 4625 25902451 ~ 25902532 (+) True trnas-uga_22
unassigned_transcript_455 other upstream 4972 25902105 ~ 25902185 (+) True trnas-aga_24
unassigned_transcript_461 other downstream 110 25907348 ~ 25907420 (+) True trnak-uuu_25
unassigned_transcript_462 other downstream 912 25908150 ~ 25908232 (+) True trnas-aga_26
unassigned_transcript_463 other downstream 1259 25908497 ~ 25908578 (+) True trnas-uga_24
unassigned_transcript_464 other downstream 2075 25909313 ~ 25909384 (+) True trnah-gug_3
unassigned_transcript_465 other downstream 25943 25933181 ~ 25933262 (+) True trnas-aga_27