RNA id: unassigned_transcript_463


Basic Information

Item Value
RNA id unassigned_transcript_463
length 82
RNA type tRNA
GC content 0.60
exon number 1
gene id trnas-uga_24
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25908497 ~ 25908578 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtagtcgtggccgagaggttaaggcgatggacttgaaatccattggggtctccccgcgcaggttcgaaccctgccgactacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46343 lncRNA upstream 90933 25817071 ~ 25817564 (+) True G31388
TU46346 lncRNA upstream 91042 25817031 ~ 25817455 (+) False G31388
TU46344 lncRNA upstream 91042 25817071 ~ 25817455 (+) False G31388
TU46335 lncRNA upstream 120596 25787380 ~ 25787901 (+) True G31380
TU46232 lncRNA upstream 222512 25680141 ~ 25685985 (+) True LOC122342771
XR_006250606.1 lncRNA downstream 7811 25916389 ~ 25917199 (+) True LOC122342592
XR_006250570.1 lncRNA downstream 252913 26161491 ~ 26163397 (+) True LOC122342452
TU46361 lncRNA downstream 527770 26436348 ~ 26436599 (+) True G31403
TU46362 lncRNA downstream 534928 26443506 ~ 26443991 (+) True G31404
TU46370 lncRNA downstream 570138 26478716 ~ 26478933 (+) True G31412
XM_043236264.1 mRNA upstream 179846 25711662 ~ 25728651 (+) True col9a3
XM_043237791.1 mRNA upstream 198860 25703831 ~ 25709637 (+) True ogfr
XM_043237792.1 mRNA upstream 198860 25703962 ~ 25709637 (+) False ogfr
XM_043236865.1 mRNA upstream 222625 25635051 ~ 25685872 (+) False LOC122342771
XM_043236137.1 mRNA downstream 66299 25974877 ~ 25977623 (+) True LOC122342357
XM_043236141.1 mRNA downstream 264616 26173194 ~ 26177618 (+) True LOC122342360
XM_043236142.1 mRNA downstream 474338 26382916 ~ 26427239 (+) True LOC122342362
XM_043236145.1 mRNA downstream 856375 26764953 ~ 26767173 (+) True LOC122342366
XM_043236148.1 mRNA downstream 1096123 27004701 ~ 27006306 (+) True LOC122342369
unassigned_transcript_462 other upstream 265 25908150 ~ 25908232 (+) True trnas-aga_26
unassigned_transcript_461 other upstream 1077 25907348 ~ 25907420 (+) True trnak-uuu_25
unassigned_transcript_460 other upstream 1259 25907157 ~ 25907238 (+) True trnas-uga_23
unassigned_transcript_459 other upstream 1803 25906622 ~ 25906694 (+) True trnak-uuu_24
unassigned_transcript_458 other upstream 3646 25904770 ~ 25904851 (+) True trnas-aga_25
unassigned_transcript_464 other downstream 735 25909313 ~ 25909384 (+) True trnah-gug_3
unassigned_transcript_465 other downstream 24603 25933181 ~ 25933262 (+) True trnas-aga_27
unassigned_transcript_466 other downstream 27580 25936158 ~ 25936240 (+) True trnas-uga_25
unassigned_transcript_467 other downstream 29069 25937647 ~ 25937719 (+) True trnak-uuu_26
unassigned_transcript_468 other downstream 29874 25938452 ~ 25938533 (+) True trnas-aga_28