RNA id: unassigned_transcript_471


Basic Information

Item Value
RNA id unassigned_transcript_471
length 82
RNA type tRNA
GC content 0.55
exon number 1
gene id trnas-aga_29
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25946790 ~ 25946871 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtagtcgtggctgagtggttaaggcgatggactagaaatccattggggtctcccgtgcagagttcgaatcctgccgactacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250606.1 lncRNA upstream 29591 25916389 ~ 25917199 (+) True LOC122342592
TU46343 lncRNA upstream 129226 25817071 ~ 25817564 (+) True G31388
TU46346 lncRNA upstream 129335 25817031 ~ 25817455 (+) False G31388
TU46344 lncRNA upstream 129335 25817071 ~ 25817455 (+) False G31388
TU46335 lncRNA upstream 158889 25787380 ~ 25787901 (+) True G31380
XR_006250570.1 lncRNA downstream 214620 26161491 ~ 26163397 (+) True LOC122342452
TU46361 lncRNA downstream 489477 26436348 ~ 26436599 (+) True G31403
TU46362 lncRNA downstream 496635 26443506 ~ 26443991 (+) True G31404
TU46370 lncRNA downstream 531845 26478716 ~ 26478933 (+) True G31412
XR_006250760.1 lncRNA downstream 822060 26768931 ~ 26769820 (+) True LOC122343359
XM_043236264.1 mRNA upstream 218139 25711662 ~ 25728651 (+) True col9a3
XM_043237791.1 mRNA upstream 237153 25703831 ~ 25709637 (+) True ogfr
XM_043237792.1 mRNA upstream 237153 25703962 ~ 25709637 (+) False ogfr
XM_043236865.1 mRNA upstream 260918 25635051 ~ 25685872 (+) False LOC122342771
XM_043236137.1 mRNA downstream 28006 25974877 ~ 25977623 (+) True LOC122342357
XM_043236141.1 mRNA downstream 226323 26173194 ~ 26177618 (+) True LOC122342360
XM_043236142.1 mRNA downstream 436045 26382916 ~ 26427239 (+) True LOC122342362
XM_043236145.1 mRNA downstream 818082 26764953 ~ 26767173 (+) True LOC122342366
XM_043236148.1 mRNA downstream 1057830 27004701 ~ 27006306 (+) True LOC122342369
unassigned_transcript_470 other upstream 2231 25944479 ~ 25944559 (+) True trnas-uga_27
unassigned_transcript_469 other upstream 5608 25941101 ~ 25941182 (+) True trnas-uga_26
unassigned_transcript_468 other upstream 8257 25938452 ~ 25938533 (+) True trnas-aga_28
unassigned_transcript_467 other upstream 9071 25937647 ~ 25937719 (+) True trnak-uuu_26
unassigned_transcript_466 other upstream 10550 25936158 ~ 25936240 (+) True trnas-uga_25
unassigned_transcript_472 other downstream 263 25947134 ~ 25947215 (+) True trnas-uga_28
unassigned_transcript_473 other downstream 2205 25949076 ~ 25949159 (+) True trnas-aga_30
unassigned_transcript_474 other downstream 2553 25949424 ~ 25949505 (+) True trnas-uga_29
unassigned_transcript_475 other downstream 4766 25951637 ~ 25951718 (+) True trnas-uga_30
unassigned_transcript_483 other downstream 51952 25998823 ~ 25998895 (+) True trnaa-agc_2