RNA id: unassigned_transcript_477



Basic Information


Item Value
RNA id unassigned_transcript_477
length 73
RNA type tRNA
GC content 0.55
exon number 1
gene id trnak-uuu_27
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25984834 ~ 25984906 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


gcctggatagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcgggcg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006250768.1 lncRNA downstream 65424 25918811 ~ 25919410 (-) True LOC122343400
TU46348 lncRNA downstream 68877 25915697 ~ 25915957 (-) True G31390
TU46342 lncRNA downstream 169609 25813904 ~ 25815225 (-) True G31387
TU46340 lncRNA downstream 171219 25812640 ~ 25813615 (-) True G31385
TU46336 lncRNA downstream 196959 25787380 ~ 25787875 (-) True G31381
XR_006250568.1 lncRNA upstream 35642 26020548 ~ 26021384 (-) True LOC122342449
TU46357 lncRNA upstream 253014 26237920 ~ 26238238 (-) True G31399
XR_006250605.1 lncRNA upstream 318756 26303662 ~ 26304672 (-) True LOC122342589
TU46360 lncRNA upstream 443246 26428152 ~ 26433786 (-) True G31402
TU46371 lncRNA upstream 493810 26478716 ~ 26478933 (-) True G31413
XM_043236136.1 mRNA downstream 29213 25952760 ~ 25955621 (-) True LOC122342356
XM_043237668.1 mRNA downstream 206313 25762532 ~ 25778521 (-) True hm13
XM_043237669.1 mRNA downstream 206315 25762532 ~ 25778519 (-) False hm13
XM_043236861.1 mRNA downstream 223229 25741596 ~ 25761605 (-) True si:ch73-181d5.4
XM_043236267.1 mRNA downstream 243921 25728094 ~ 25740913 (-) True LOC122342461
XM_043236138.1 mRNA upstream 37238 26022144 ~ 26023244 (-) True LOC122342358
XM_043236140.1 mRNA upstream 39031 26023937 ~ 26026107 (-) True LOC122342359
XM_043236143.1 mRNA upstream 705078 26689984 ~ 26691677 (-) True LOC122342363
XM_043236144.1 mRNA upstream 707715 26692621 ~ 26693546 (-) True LOC122342364
XM_043236146.1 mRNA upstream 880867 26865773 ~ 26869148 (-) True LOC122342367
unassigned_transcript_476 other downstream 3288 25981466 ~ 25981546 (-) True trnas-uga_31
TU46256 other downstream 423636 25559040 ~ 25561198 (-) True G31314
XR_006250868.1 other downstream 598017 25386628 ~ 25386817 (-) True LOC122343881
XR_006250847.1 other downstream 598460 25386213 ~ 25386374 (-) True LOC122343859
XR_006250865.1 other downstream 599988 25384655 ~ 25384846 (-) True LOC122343878
unassigned_transcript_478 other upstream 1059 25985965 ~ 25986045 (-) True trnas-uga_32
unassigned_transcript_479 other upstream 1399 25986305 ~ 25986386 (-) True trnas-aga_31
unassigned_transcript_480 other upstream 3704 25988610 ~ 25988691 (-) True trnas-uga_33
unassigned_transcript_481 other upstream 7072 25991978 ~ 25992059 (-) True trnas-uga_34
unassigned_transcript_482 other upstream 10541 25995447 ~ 25995519 (-) True trnak-uuu_28