RNA id: unassigned_transcript_479



Basic Information


Item Value
RNA id unassigned_transcript_479
length 82
RNA type tRNA
GC content 0.59
exon number 1
gene id trnas-aga_31
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25986305 ~ 25986386 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


gtagtcgtggccgagtggttaaggcgatggactagaaatccattggggtctcccgccgcaggttcgaatcctgccgactacg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006250768.1 lncRNA downstream 66895 25918811 ~ 25919410 (-) True LOC122343400
TU46348 lncRNA downstream 70348 25915697 ~ 25915957 (-) True G31390
TU46342 lncRNA downstream 171080 25813904 ~ 25815225 (-) True G31387
TU46340 lncRNA downstream 172690 25812640 ~ 25813615 (-) True G31385
TU46336 lncRNA downstream 198430 25787380 ~ 25787875 (-) True G31381
XR_006250568.1 lncRNA upstream 34162 26020548 ~ 26021384 (-) True LOC122342449
TU46357 lncRNA upstream 251534 26237920 ~ 26238238 (-) True G31399
XR_006250605.1 lncRNA upstream 317276 26303662 ~ 26304672 (-) True LOC122342589
TU46360 lncRNA upstream 441766 26428152 ~ 26433786 (-) True G31402
TU46371 lncRNA upstream 492330 26478716 ~ 26478933 (-) True G31413
XM_043236136.1 mRNA downstream 30684 25952760 ~ 25955621 (-) True LOC122342356
XM_043237668.1 mRNA downstream 207784 25762532 ~ 25778521 (-) True hm13
XM_043237669.1 mRNA downstream 207786 25762532 ~ 25778519 (-) False hm13
XM_043236861.1 mRNA downstream 224700 25741596 ~ 25761605 (-) True si:ch73-181d5.4
XM_043236267.1 mRNA downstream 245392 25728094 ~ 25740913 (-) True LOC122342461
XM_043236138.1 mRNA upstream 35758 26022144 ~ 26023244 (-) True LOC122342358
XM_043236140.1 mRNA upstream 37551 26023937 ~ 26026107 (-) True LOC122342359
XM_043236143.1 mRNA upstream 703598 26689984 ~ 26691677 (-) True LOC122342363
XM_043236144.1 mRNA upstream 706235 26692621 ~ 26693546 (-) True LOC122342364
XM_043236146.1 mRNA upstream 879387 26865773 ~ 26869148 (-) True LOC122342367
unassigned_transcript_478 other downstream 260 25985965 ~ 25986045 (-) True trnas-uga_32
unassigned_transcript_477 other downstream 1399 25984834 ~ 25984906 (-) True trnak-uuu_27
unassigned_transcript_476 other downstream 4759 25981466 ~ 25981546 (-) True trnas-uga_31
TU46256 other downstream 425107 25559040 ~ 25561198 (-) True G31314
XR_006250868.1 other downstream 599488 25386628 ~ 25386817 (-) True LOC122343881
unassigned_transcript_480 other upstream 2224 25988610 ~ 25988691 (-) True trnas-uga_33
unassigned_transcript_481 other upstream 5592 25991978 ~ 25992059 (-) True trnas-uga_34
unassigned_transcript_482 other upstream 9061 25995447 ~ 25995519 (-) True trnak-uuu_28
unassigned_transcript_484 other upstream 13117 25999503 ~ 25999584 (-) True trnas-uga_35
unassigned_transcript_485 other upstream 13460 25999846 ~ 25999927 (-) True trnas-aga_32