RNA id: unassigned_transcript_483


Basic Information

Item Value
RNA id unassigned_transcript_483
length 73
RNA type tRNA
GC content 0.55
exon number 1
gene id trnaa-agc_2
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 25998823 ~ 25998895 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ggggaattagctcaaatggtagagcgctcgcttagcatgcgagaggttgtgggatcgatgcccgcattctcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250606.1 lncRNA upstream 81624 25916389 ~ 25917199 (+) True LOC122342592
TU46343 lncRNA upstream 181259 25817071 ~ 25817564 (+) True G31388
TU46346 lncRNA upstream 181368 25817031 ~ 25817455 (+) False G31388
TU46344 lncRNA upstream 181368 25817071 ~ 25817455 (+) False G31388
TU46335 lncRNA upstream 210922 25787380 ~ 25787901 (+) True G31380
XR_006250570.1 lncRNA downstream 162596 26161491 ~ 26163397 (+) True LOC122342452
TU46361 lncRNA downstream 437453 26436348 ~ 26436599 (+) True G31403
TU46362 lncRNA downstream 444611 26443506 ~ 26443991 (+) True G31404
TU46370 lncRNA downstream 479821 26478716 ~ 26478933 (+) True G31412
XR_006250760.1 lncRNA downstream 770036 26768931 ~ 26769820 (+) True LOC122343359
XM_043236137.1 mRNA upstream 21200 25974877 ~ 25977623 (+) True LOC122342357
XM_043236264.1 mRNA upstream 270172 25711662 ~ 25728651 (+) True col9a3
XM_043237791.1 mRNA upstream 289186 25703831 ~ 25709637 (+) True ogfr
XM_043237792.1 mRNA upstream 289186 25703962 ~ 25709637 (+) False ogfr
XM_043236865.1 mRNA upstream 312951 25635051 ~ 25685872 (+) False LOC122342771
XM_043236141.1 mRNA downstream 174299 26173194 ~ 26177618 (+) True LOC122342360
XM_043236142.1 mRNA downstream 384021 26382916 ~ 26427239 (+) True LOC122342362
XM_043236145.1 mRNA downstream 766058 26764953 ~ 26767173 (+) True LOC122342366
XM_043236148.1 mRNA downstream 1005806 27004701 ~ 27006306 (+) True LOC122342369
XM_043236149.1 mRNA downstream 1208841 27207736 ~ 27210602 (+) True LOC122342370
unassigned_transcript_475 other upstream 47105 25951637 ~ 25951718 (+) True trnas-uga_30
unassigned_transcript_474 other upstream 49318 25949424 ~ 25949505 (+) True trnas-uga_29
unassigned_transcript_473 other upstream 49664 25949076 ~ 25949159 (+) True trnas-aga_30
unassigned_transcript_472 other upstream 51608 25947134 ~ 25947215 (+) True trnas-uga_28
unassigned_transcript_471 other upstream 51952 25946790 ~ 25946871 (+) True trnas-aga_29
unassigned_transcript_492 other downstream 10150 26009045 ~ 26009117 (+) True trnaa-agc_3
unassigned_transcript_498 other downstream 32726 26031621 ~ 26031693 (+) True trnaa-agc_4
unassigned_transcript_505 other downstream 46781 26045676 ~ 26045748 (+) True trnak-uuu_33
unassigned_transcript_506 other downstream 47583 26046478 ~ 26046558 (+) True trnas-aga_39
unassigned_transcript_507 other downstream 50147 26049042 ~ 26049123 (+) True trnas-aga_40