RNA id: unassigned_transcript_487



Basic Information


Item Value
RNA id unassigned_transcript_487
length 82
RNA type tRNA
GC content 0.55
exon number 1
gene id trnas-aga_33
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26002494 ~ 26002575 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


gtagtcgtggccgagtggttaaggcgatggactagaaatccattggggtctccccacGCAAGTTctaatcctgccgactacg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006250768.1 lncRNA downstream 83084 25918811 ~ 25919410 (-) True LOC122343400
TU46348 lncRNA downstream 86537 25915697 ~ 25915957 (-) True G31390
TU46342 lncRNA downstream 187269 25813904 ~ 25815225 (-) True G31387
TU46340 lncRNA downstream 188879 25812640 ~ 25813615 (-) True G31385
TU46336 lncRNA downstream 214619 25787380 ~ 25787875 (-) True G31381
XR_006250568.1 lncRNA upstream 17973 26020548 ~ 26021384 (-) True LOC122342449
TU46357 lncRNA upstream 235345 26237920 ~ 26238238 (-) True G31399
XR_006250605.1 lncRNA upstream 301087 26303662 ~ 26304672 (-) True LOC122342589
TU46360 lncRNA upstream 425577 26428152 ~ 26433786 (-) True G31402
TU46371 lncRNA upstream 476141 26478716 ~ 26478933 (-) True G31413
XM_043236136.1 mRNA downstream 46873 25952760 ~ 25955621 (-) True LOC122342356
XM_043237668.1 mRNA downstream 223973 25762532 ~ 25778521 (-) True hm13
XM_043237669.1 mRNA downstream 223975 25762532 ~ 25778519 (-) False hm13
XM_043236861.1 mRNA downstream 240889 25741596 ~ 25761605 (-) True si:ch73-181d5.4
XM_043236267.1 mRNA downstream 261581 25728094 ~ 25740913 (-) True LOC122342461
XM_043236138.1 mRNA upstream 19569 26022144 ~ 26023244 (-) True LOC122342358
XM_043236140.1 mRNA upstream 21362 26023937 ~ 26026107 (-) True LOC122342359
XM_043236143.1 mRNA upstream 687409 26689984 ~ 26691677 (-) True LOC122342363
XM_043236144.1 mRNA upstream 690046 26692621 ~ 26693546 (-) True LOC122342364
XM_043236146.1 mRNA upstream 863198 26865773 ~ 26869148 (-) True LOC122342367
unassigned_transcript_486 other downstream 266 26002147 ~ 26002228 (-) True trnas-uga_36
unassigned_transcript_485 other downstream 2567 25999846 ~ 25999927 (-) True trnas-aga_32
unassigned_transcript_484 other downstream 2910 25999503 ~ 25999584 (-) True trnas-uga_35
unassigned_transcript_482 other downstream 6975 25995447 ~ 25995519 (-) True trnak-uuu_28
unassigned_transcript_481 other downstream 10435 25991978 ~ 25992059 (-) True trnas-uga_34
unassigned_transcript_488 other upstream 741 26003316 ~ 26003388 (-) True trnak-uuu_29
unassigned_transcript_489 other upstream 2568 26005143 ~ 26005223 (-) True trnas-aga_34
unassigned_transcript_490 other upstream 4499 26007074 ~ 26007155 (-) True trnas-uga_37
unassigned_transcript_491 other upstream 4846 26007421 ~ 26007502 (-) True trnas-aga_35
unassigned_transcript_493 other upstream 7152 26009727 ~ 26009807 (-) True trnas-uga_38