RNA id: unassigned_transcript_488



Basic Information


Item Value
RNA id unassigned_transcript_488
length 73
RNA type tRNA
GC content 0.55
exon number 1
gene id trnak-uuu_29
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26003316 ~ 26003388 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


gcctggatagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcgggcg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006250768.1 lncRNA downstream 83906 25918811 ~ 25919410 (-) True LOC122343400
TU46348 lncRNA downstream 87359 25915697 ~ 25915957 (-) True G31390
TU46342 lncRNA downstream 188091 25813904 ~ 25815225 (-) True G31387
TU46340 lncRNA downstream 189701 25812640 ~ 25813615 (-) True G31385
TU46336 lncRNA downstream 215441 25787380 ~ 25787875 (-) True G31381
XR_006250568.1 lncRNA upstream 17160 26020548 ~ 26021384 (-) True LOC122342449
TU46357 lncRNA upstream 234532 26237920 ~ 26238238 (-) True G31399
XR_006250605.1 lncRNA upstream 300274 26303662 ~ 26304672 (-) True LOC122342589
TU46360 lncRNA upstream 424764 26428152 ~ 26433786 (-) True G31402
TU46371 lncRNA upstream 475328 26478716 ~ 26478933 (-) True G31413
XM_043236136.1 mRNA downstream 47695 25952760 ~ 25955621 (-) True LOC122342356
XM_043237668.1 mRNA downstream 224795 25762532 ~ 25778521 (-) True hm13
XM_043237669.1 mRNA downstream 224797 25762532 ~ 25778519 (-) False hm13
XM_043236861.1 mRNA downstream 241711 25741596 ~ 25761605 (-) True si:ch73-181d5.4
XM_043236267.1 mRNA downstream 262403 25728094 ~ 25740913 (-) True LOC122342461
XM_043236138.1 mRNA upstream 18756 26022144 ~ 26023244 (-) True LOC122342358
XM_043236140.1 mRNA upstream 20549 26023937 ~ 26026107 (-) True LOC122342359
XM_043236143.1 mRNA upstream 686596 26689984 ~ 26691677 (-) True LOC122342363
XM_043236144.1 mRNA upstream 689233 26692621 ~ 26693546 (-) True LOC122342364
XM_043236146.1 mRNA upstream 862385 26865773 ~ 26869148 (-) True LOC122342367
unassigned_transcript_487 other downstream 741 26002494 ~ 26002575 (-) True trnas-aga_33
unassigned_transcript_486 other downstream 1088 26002147 ~ 26002228 (-) True trnas-uga_36
unassigned_transcript_485 other downstream 3389 25999846 ~ 25999927 (-) True trnas-aga_32
unassigned_transcript_484 other downstream 3732 25999503 ~ 25999584 (-) True trnas-uga_35
unassigned_transcript_482 other downstream 7797 25995447 ~ 25995519 (-) True trnak-uuu_28
unassigned_transcript_489 other upstream 1755 26005143 ~ 26005223 (-) True trnas-aga_34
unassigned_transcript_490 other upstream 3686 26007074 ~ 26007155 (-) True trnas-uga_37
unassigned_transcript_491 other upstream 4033 26007421 ~ 26007502 (-) True trnas-aga_35
unassigned_transcript_493 other upstream 6339 26009727 ~ 26009807 (-) True trnas-uga_38
unassigned_transcript_494 other upstream 7482 26010870 ~ 26010942 (-) True trnak-uuu_30