RNA id: unassigned_transcript_492


Basic Information

Item Value
RNA id unassigned_transcript_492
length 73
RNA type tRNA
GC content 0.55
exon number 1
gene id trnaa-agc_3
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26009045 ~ 26009117 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

ggggaattagctcaaatggtagagcgctcgcttagcatgcgagaggtagtgggatcgatgcccgcattctcca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250606.1 lncRNA upstream 91846 25916389 ~ 25917199 (+) True LOC122342592
TU46343 lncRNA upstream 191481 25817071 ~ 25817564 (+) True G31388
TU46346 lncRNA upstream 191590 25817031 ~ 25817455 (+) False G31388
TU46344 lncRNA upstream 191590 25817071 ~ 25817455 (+) False G31388
TU46335 lncRNA upstream 221144 25787380 ~ 25787901 (+) True G31380
XR_006250570.1 lncRNA downstream 152374 26161491 ~ 26163397 (+) True LOC122342452
TU46361 lncRNA downstream 427231 26436348 ~ 26436599 (+) True G31403
TU46362 lncRNA downstream 434389 26443506 ~ 26443991 (+) True G31404
TU46370 lncRNA downstream 469599 26478716 ~ 26478933 (+) True G31412
XR_006250760.1 lncRNA downstream 759814 26768931 ~ 26769820 (+) True LOC122343359
XM_043236137.1 mRNA upstream 31422 25974877 ~ 25977623 (+) True LOC122342357
XM_043236264.1 mRNA upstream 280394 25711662 ~ 25728651 (+) True col9a3
XM_043237791.1 mRNA upstream 299408 25703831 ~ 25709637 (+) True ogfr
XM_043237792.1 mRNA upstream 299408 25703962 ~ 25709637 (+) False ogfr
XM_043236871.1 mRNA upstream 323173 25636264 ~ 25685872 (+) False LOC122342771
XM_043236141.1 mRNA downstream 164077 26173194 ~ 26177618 (+) True LOC122342360
XM_043236142.1 mRNA downstream 373799 26382916 ~ 26427239 (+) True LOC122342362
XM_043236145.1 mRNA downstream 755836 26764953 ~ 26767173 (+) True LOC122342366
XM_043236148.1 mRNA downstream 995584 27004701 ~ 27006306 (+) True LOC122342369
XM_043236149.1 mRNA downstream 1198619 27207736 ~ 27210602 (+) True LOC122342370
unassigned_transcript_483 other upstream 10150 25998823 ~ 25998895 (+) True trnaa-agc_2
unassigned_transcript_475 other upstream 57327 25951637 ~ 25951718 (+) True trnas-uga_30
unassigned_transcript_474 other upstream 59540 25949424 ~ 25949505 (+) True trnas-uga_29
unassigned_transcript_473 other upstream 59886 25949076 ~ 25949159 (+) True trnas-aga_30
unassigned_transcript_472 other upstream 61830 25947134 ~ 25947215 (+) True trnas-uga_28
unassigned_transcript_498 other downstream 22504 26031621 ~ 26031693 (+) True trnaa-agc_4
unassigned_transcript_505 other downstream 36559 26045676 ~ 26045748 (+) True trnak-uuu_33
unassigned_transcript_506 other downstream 37361 26046478 ~ 26046558 (+) True trnas-aga_39
unassigned_transcript_507 other downstream 39925 26049042 ~ 26049123 (+) True trnas-aga_40
unassigned_transcript_508 other downstream 40267 26049384 ~ 26049465 (+) True trnas-uga_40

Expression Profile