RNA id: unassigned_transcript_509


Basic Information

Item Value
RNA id unassigned_transcript_509
length 73
RNA type tRNA
GC content 0.55
exon number 1
gene id trnak-uuu_34
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26050880 ~ 26050952 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gcctggatagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcgggcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250606.1 lncRNA upstream 133681 25916389 ~ 25917199 (+) True LOC122342592
TU46343 lncRNA upstream 233316 25817071 ~ 25817564 (+) True G31388
TU46346 lncRNA upstream 233425 25817031 ~ 25817455 (+) False G31388
TU46344 lncRNA upstream 233425 25817071 ~ 25817455 (+) False G31388
TU46335 lncRNA upstream 262979 25787380 ~ 25787901 (+) True G31380
XR_006250570.1 lncRNA downstream 110539 26161491 ~ 26163397 (+) True LOC122342452
TU46361 lncRNA downstream 385396 26436348 ~ 26436599 (+) True G31403
TU46362 lncRNA downstream 392554 26443506 ~ 26443991 (+) True G31404
TU46370 lncRNA downstream 427764 26478716 ~ 26478933 (+) True G31412
XR_006250760.1 lncRNA downstream 717979 26768931 ~ 26769820 (+) True LOC122343359
XM_043236137.1 mRNA upstream 73257 25974877 ~ 25977623 (+) True LOC122342357
XM_043236264.1 mRNA upstream 322229 25711662 ~ 25728651 (+) True col9a3
XM_043237791.1 mRNA upstream 341243 25703831 ~ 25709637 (+) True ogfr
XM_043237792.1 mRNA upstream 341243 25703962 ~ 25709637 (+) False ogfr
XM_043236871.1 mRNA upstream 365008 25636264 ~ 25685872 (+) False LOC122342771
XM_043236141.1 mRNA downstream 122242 26173194 ~ 26177618 (+) True LOC122342360
XM_043236142.1 mRNA downstream 331964 26382916 ~ 26427239 (+) True LOC122342362
XM_043236145.1 mRNA downstream 714001 26764953 ~ 26767173 (+) True LOC122342366
XM_043236148.1 mRNA downstream 953749 27004701 ~ 27006306 (+) True LOC122342369
XM_043236149.1 mRNA downstream 1156784 27207736 ~ 27210602 (+) True LOC122342370
unassigned_transcript_508 other upstream 1415 26049384 ~ 26049465 (+) True trnas-uga_40
unassigned_transcript_507 other upstream 1757 26049042 ~ 26049123 (+) True trnas-aga_40
unassigned_transcript_506 other upstream 4322 26046478 ~ 26046558 (+) True trnas-aga_39
unassigned_transcript_505 other upstream 5132 26045676 ~ 26045748 (+) True trnak-uuu_33
unassigned_transcript_498 other upstream 19187 26031621 ~ 26031693 (+) True trnaa-agc_4
unassigned_transcript_510 other downstream 731 26051683 ~ 26051765 (+) True trnas-aga_41
unassigned_transcript_511 other downstream 1074 26052026 ~ 26052107 (+) True trnas-uga_41
unassigned_transcript_512 other downstream 2582 26053534 ~ 26053606 (+) True trnak-uuu_35
unassigned_transcript_513 other downstream 3390 26054342 ~ 26054422 (+) True trnas-aga_42
unassigned_transcript_514 other downstream 3733 26054685 ~ 26054766 (+) True trnas-uga_42