RNA id: unassigned_transcript_514


Basic Information

Item Value
RNA id unassigned_transcript_514
length 82
RNA type tRNA
GC content 0.60
exon number 1
gene id trnas-uga_42
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26054685 ~ 26054766 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtagtcgtggccgagaggttaaggcgatggacttgaaatccattggggtctcccgcgcaggttcgaacccctgccgactacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250606.1 lncRNA upstream 137486 25916389 ~ 25917199 (+) True LOC122342592
TU46343 lncRNA upstream 237121 25817071 ~ 25817564 (+) True G31388
TU46346 lncRNA upstream 237230 25817031 ~ 25817455 (+) False G31388
TU46344 lncRNA upstream 237230 25817071 ~ 25817455 (+) False G31388
TU46335 lncRNA upstream 266784 25787380 ~ 25787901 (+) True G31380
XR_006250570.1 lncRNA downstream 106725 26161491 ~ 26163397 (+) True LOC122342452
TU46361 lncRNA downstream 381582 26436348 ~ 26436599 (+) True G31403
TU46362 lncRNA downstream 388740 26443506 ~ 26443991 (+) True G31404
TU46370 lncRNA downstream 423950 26478716 ~ 26478933 (+) True G31412
XR_006250760.1 lncRNA downstream 714165 26768931 ~ 26769820 (+) True LOC122343359
XM_043236137.1 mRNA upstream 77062 25974877 ~ 25977623 (+) True LOC122342357
XM_043236264.1 mRNA upstream 326034 25711662 ~ 25728651 (+) True col9a3
XM_043237791.1 mRNA upstream 345048 25703831 ~ 25709637 (+) True ogfr
XM_043237792.1 mRNA upstream 345048 25703962 ~ 25709637 (+) False ogfr
XM_043236871.1 mRNA upstream 368813 25636264 ~ 25685872 (+) False LOC122342771
XM_043236141.1 mRNA downstream 118428 26173194 ~ 26177618 (+) True LOC122342360
XM_043236142.1 mRNA downstream 328150 26382916 ~ 26427239 (+) True LOC122342362
XM_043236145.1 mRNA downstream 710187 26764953 ~ 26767173 (+) True LOC122342366
XM_043236148.1 mRNA downstream 949935 27004701 ~ 27006306 (+) True LOC122342369
XM_043236149.1 mRNA downstream 1152970 27207736 ~ 27210602 (+) True LOC122342370
unassigned_transcript_513 other upstream 263 26054342 ~ 26054422 (+) True trnas-aga_42
unassigned_transcript_512 other upstream 1079 26053534 ~ 26053606 (+) True trnak-uuu_35
unassigned_transcript_511 other upstream 2578 26052026 ~ 26052107 (+) True trnas-uga_41
unassigned_transcript_510 other upstream 2920 26051683 ~ 26051765 (+) True trnas-aga_41
unassigned_transcript_509 other upstream 3733 26050880 ~ 26050952 (+) True trnak-uuu_34
unassigned_transcript_515 other downstream 1421 26056187 ~ 26056259 (+) True trnak-uuu_36
unassigned_transcript_516 other downstream 2225 26056991 ~ 26057071 (+) True trnas-aga_43
unassigned_transcript_517 other downstream 2571 26057337 ~ 26057418 (+) True trnas-uga_43
unassigned_transcript_518 other downstream 4075 26058841 ~ 26058913 (+) True trnak-uuu_37
unassigned_transcript_519 other downstream 4875 26059641 ~ 26059722 (+) True trnas-aga_44