RNA id: unassigned_transcript_517


Basic Information

Item Value
RNA id unassigned_transcript_517
length 82
RNA type tRNA
GC content 0.60
exon number 1
gene id trnas-uga_43
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26057337 ~ 26057418 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtagtcgtggccgagaggttaaggcgatggacttgaaatccattggggtctccccgcgcaggttcgaaccctgccgactacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250606.1 lncRNA upstream 140138 25916389 ~ 25917199 (+) True LOC122342592
TU46343 lncRNA upstream 239773 25817071 ~ 25817564 (+) True G31388
TU46346 lncRNA upstream 239882 25817031 ~ 25817455 (+) False G31388
TU46344 lncRNA upstream 239882 25817071 ~ 25817455 (+) False G31388
TU46335 lncRNA upstream 269436 25787380 ~ 25787901 (+) True G31380
XR_006250570.1 lncRNA downstream 104073 26161491 ~ 26163397 (+) True LOC122342452
TU46361 lncRNA downstream 378930 26436348 ~ 26436599 (+) True G31403
TU46362 lncRNA downstream 386088 26443506 ~ 26443991 (+) True G31404
TU46370 lncRNA downstream 421298 26478716 ~ 26478933 (+) True G31412
XR_006250760.1 lncRNA downstream 711513 26768931 ~ 26769820 (+) True LOC122343359
XM_043236137.1 mRNA upstream 79714 25974877 ~ 25977623 (+) True LOC122342357
XM_043236264.1 mRNA upstream 328686 25711662 ~ 25728651 (+) True col9a3
XM_043237791.1 mRNA upstream 347700 25703831 ~ 25709637 (+) True ogfr
XM_043237792.1 mRNA upstream 347700 25703962 ~ 25709637 (+) False ogfr
XM_043236871.1 mRNA upstream 371465 25636264 ~ 25685872 (+) False LOC122342771
XM_043236141.1 mRNA downstream 115776 26173194 ~ 26177618 (+) True LOC122342360
XM_043236142.1 mRNA downstream 325498 26382916 ~ 26427239 (+) True LOC122342362
XM_043236145.1 mRNA downstream 707535 26764953 ~ 26767173 (+) True LOC122342366
XM_043236148.1 mRNA downstream 947283 27004701 ~ 27006306 (+) True LOC122342369
XM_043236149.1 mRNA downstream 1150318 27207736 ~ 27210602 (+) True LOC122342370
unassigned_transcript_516 other upstream 266 26056991 ~ 26057071 (+) True trnas-aga_43
unassigned_transcript_515 other upstream 1078 26056187 ~ 26056259 (+) True trnak-uuu_36
unassigned_transcript_514 other upstream 2571 26054685 ~ 26054766 (+) True trnas-uga_42
unassigned_transcript_513 other upstream 2915 26054342 ~ 26054422 (+) True trnas-aga_42
unassigned_transcript_512 other upstream 3731 26053534 ~ 26053606 (+) True trnak-uuu_35
unassigned_transcript_518 other downstream 1423 26058841 ~ 26058913 (+) True trnak-uuu_37
unassigned_transcript_519 other downstream 2223 26059641 ~ 26059722 (+) True trnas-aga_44
unassigned_transcript_520 other downstream 2570 26059988 ~ 26060069 (+) True trnas-uga_44
unassigned_transcript_521 other downstream 4077 26061495 ~ 26061567 (+) True trnak-uuu_38
unassigned_transcript_522 other downstream 4884 26062302 ~ 26062382 (+) True trnas-aga_45