RNA id: unassigned_transcript_520


Basic Information

Item Value
RNA id unassigned_transcript_520
length 82
RNA type tRNA
GC content 0.60
exon number 1
gene id trnas-uga_44
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26059988 ~ 26060069 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtagtcgtggccgagaggttaaggcgatggacttgaaatccattggggtctccccgcgcaggttcgaaccctgccgactacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250606.1 lncRNA upstream 142789 25916389 ~ 25917199 (+) True LOC122342592
TU46343 lncRNA upstream 242424 25817071 ~ 25817564 (+) True G31388
TU46346 lncRNA upstream 242533 25817031 ~ 25817455 (+) False G31388
TU46344 lncRNA upstream 242533 25817071 ~ 25817455 (+) False G31388
TU46335 lncRNA upstream 272087 25787380 ~ 25787901 (+) True G31380
XR_006250570.1 lncRNA downstream 101422 26161491 ~ 26163397 (+) True LOC122342452
TU46361 lncRNA downstream 376279 26436348 ~ 26436599 (+) True G31403
TU46362 lncRNA downstream 383437 26443506 ~ 26443991 (+) True G31404
TU46370 lncRNA downstream 418647 26478716 ~ 26478933 (+) True G31412
XR_006250760.1 lncRNA downstream 708862 26768931 ~ 26769820 (+) True LOC122343359
XM_043236137.1 mRNA upstream 82365 25974877 ~ 25977623 (+) True LOC122342357
XM_043236264.1 mRNA upstream 331337 25711662 ~ 25728651 (+) True col9a3
XM_043237791.1 mRNA upstream 350351 25703831 ~ 25709637 (+) True ogfr
XM_043237792.1 mRNA upstream 350351 25703962 ~ 25709637 (+) False ogfr
XM_043236871.1 mRNA upstream 374116 25636264 ~ 25685872 (+) False LOC122342771
XM_043236141.1 mRNA downstream 113125 26173194 ~ 26177618 (+) True LOC122342360
XM_043236142.1 mRNA downstream 322847 26382916 ~ 26427239 (+) True LOC122342362
XM_043236145.1 mRNA downstream 704884 26764953 ~ 26767173 (+) True LOC122342366
XM_043236148.1 mRNA downstream 944632 27004701 ~ 27006306 (+) True LOC122342369
XM_043236149.1 mRNA downstream 1147667 27207736 ~ 27210602 (+) True LOC122342370
unassigned_transcript_519 other upstream 266 26059641 ~ 26059722 (+) True trnas-aga_44
unassigned_transcript_518 other upstream 1075 26058841 ~ 26058913 (+) True trnak-uuu_37
unassigned_transcript_517 other upstream 2570 26057337 ~ 26057418 (+) True trnas-uga_43
unassigned_transcript_516 other upstream 2917 26056991 ~ 26057071 (+) True trnas-aga_43
unassigned_transcript_515 other upstream 3729 26056187 ~ 26056259 (+) True trnak-uuu_36
unassigned_transcript_521 other downstream 1426 26061495 ~ 26061567 (+) True trnak-uuu_38
unassigned_transcript_522 other downstream 2233 26062302 ~ 26062382 (+) True trnas-aga_45
unassigned_transcript_523 other downstream 2578 26062647 ~ 26062728 (+) True trnas-uga_45
unassigned_transcript_524 other downstream 4078 26064147 ~ 26064219 (+) True trnak-uuu_39
unassigned_transcript_525 other downstream 4881 26064950 ~ 26065030 (+) True trnas-aga_46