RNA id: unassigned_transcript_531


Basic Information

Item Value
RNA id unassigned_transcript_531
length 82
RNA type tRNA
GC content 0.59
exon number 1
gene id trnas-uga_47
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26070594 ~ 26070675 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtagtcgtggccgagaggttaaggcgatggacttgaaatccattggggtcttcccgcgcaggttcgaaccctgccgactacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250606.1 lncRNA upstream 153395 25916389 ~ 25917199 (+) True LOC122342592
TU46343 lncRNA upstream 253030 25817071 ~ 25817564 (+) True G31388
TU46346 lncRNA upstream 253139 25817031 ~ 25817455 (+) False G31388
TU46344 lncRNA upstream 253139 25817071 ~ 25817455 (+) False G31388
TU46335 lncRNA upstream 282693 25787380 ~ 25787901 (+) True G31380
XR_006250570.1 lncRNA downstream 90816 26161491 ~ 26163397 (+) True LOC122342452
TU46361 lncRNA downstream 365673 26436348 ~ 26436599 (+) True G31403
TU46362 lncRNA downstream 372831 26443506 ~ 26443991 (+) True G31404
TU46370 lncRNA downstream 408041 26478716 ~ 26478933 (+) True G31412
XR_006250760.1 lncRNA downstream 698256 26768931 ~ 26769820 (+) True LOC122343359
XM_043236137.1 mRNA upstream 92971 25974877 ~ 25977623 (+) True LOC122342357
XM_043236264.1 mRNA upstream 341943 25711662 ~ 25728651 (+) True col9a3
XM_043237791.1 mRNA upstream 360957 25703831 ~ 25709637 (+) True ogfr
XM_043237792.1 mRNA upstream 360957 25703962 ~ 25709637 (+) False ogfr
XM_043236871.1 mRNA upstream 384722 25636264 ~ 25685872 (+) False LOC122342771
XM_043236141.1 mRNA downstream 102519 26173194 ~ 26177618 (+) True LOC122342360
XM_043236142.1 mRNA downstream 312241 26382916 ~ 26427239 (+) True LOC122342362
XM_043236145.1 mRNA downstream 694278 26764953 ~ 26767173 (+) True LOC122342366
XM_043236148.1 mRNA downstream 934026 27004701 ~ 27006306 (+) True LOC122342369
XM_043236149.1 mRNA downstream 1137061 27207736 ~ 27210602 (+) True LOC122342370
unassigned_transcript_530 other upstream 260 26070255 ~ 26070334 (+) True trnas-aga_48
unassigned_transcript_529 other upstream 1075 26069447 ~ 26069519 (+) True trnak-uuu_41
unassigned_transcript_528 other upstream 2916 26067597 ~ 26067678 (+) True trnas-aga_47
unassigned_transcript_527 other upstream 3732 26066790 ~ 26066862 (+) True trnak-uuu_40
unassigned_transcript_526 other upstream 5222 26065292 ~ 26065372 (+) True trnas-uga_46
unassigned_transcript_532 other downstream 1425 26072100 ~ 26072172 (+) True trnak-uuu_42
unassigned_transcript_533 other downstream 2227 26072902 ~ 26072982 (+) True trnas-aga_49
unassigned_transcript_534 other downstream 2567 26073242 ~ 26073322 (+) True trnas-uga_48
unassigned_transcript_535 other downstream 4062 26074737 ~ 26074809 (+) True trnak-uuu_43
unassigned_transcript_536 other downstream 4865 26075540 ~ 26075620 (+) True trnas-aga_50