RNA id: unassigned_transcript_543


Basic Information

Item Value
RNA id unassigned_transcript_543
length 82
RNA type tRNA
GC content 0.60
exon number 1
gene id trnas-uga_51
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26081199 ~ 26081280 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtagtcgtggccgagaggttaaggcgatggacttgaaatccattggggtctccccgcgcaggttcgaaccctgccgactacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250606.1 lncRNA upstream 164000 25916389 ~ 25917199 (+) True LOC122342592
TU46343 lncRNA upstream 263635 25817071 ~ 25817564 (+) True G31388
TU46346 lncRNA upstream 263744 25817031 ~ 25817455 (+) False G31388
TU46344 lncRNA upstream 263744 25817071 ~ 25817455 (+) False G31388
TU46335 lncRNA upstream 293298 25787380 ~ 25787901 (+) True G31380
XR_006250570.1 lncRNA downstream 80211 26161491 ~ 26163397 (+) True LOC122342452
TU46361 lncRNA downstream 355068 26436348 ~ 26436599 (+) True G31403
TU46362 lncRNA downstream 362226 26443506 ~ 26443991 (+) True G31404
TU46370 lncRNA downstream 397436 26478716 ~ 26478933 (+) True G31412
XR_006250760.1 lncRNA downstream 687651 26768931 ~ 26769820 (+) True LOC122343359
XM_043236137.1 mRNA upstream 103576 25974877 ~ 25977623 (+) True LOC122342357
XM_043236264.1 mRNA upstream 352548 25711662 ~ 25728651 (+) True col9a3
XM_043237791.1 mRNA upstream 371562 25703831 ~ 25709637 (+) True ogfr
XM_043237792.1 mRNA upstream 371562 25703962 ~ 25709637 (+) False ogfr
XM_043236871.1 mRNA upstream 395327 25636264 ~ 25685872 (+) False LOC122342771
XM_043236141.1 mRNA downstream 91914 26173194 ~ 26177618 (+) True LOC122342360
XM_043236142.1 mRNA downstream 301636 26382916 ~ 26427239 (+) True LOC122342362
XM_043236145.1 mRNA downstream 683673 26764953 ~ 26767173 (+) True LOC122342366
XM_043236148.1 mRNA downstream 923421 27004701 ~ 27006306 (+) True LOC122342369
XM_043236149.1 mRNA downstream 1126456 27207736 ~ 27210602 (+) True LOC122342370
unassigned_transcript_542 other upstream 264 26080854 ~ 26080935 (+) True trnas-aga_52
unassigned_transcript_541 other upstream 1082 26080045 ~ 26080117 (+) True trnak-uuu_45
unassigned_transcript_540 other upstream 2575 26078544 ~ 26078624 (+) True trnas-uga_50
unassigned_transcript_539 other upstream 2924 26078194 ~ 26078275 (+) True trnas-aga_51
unassigned_transcript_538 other upstream 3741 26077386 ~ 26077458 (+) True trnak-uuu_44
unassigned_transcript_544 other downstream 1421 26082701 ~ 26082773 (+) True trnak-uuu_46
unassigned_transcript_545 other downstream 2222 26083502 ~ 26083581 (+) True trnas-aga_53
unassigned_transcript_546 other downstream 2565 26083845 ~ 26083926 (+) True trnas-uga_52
unassigned_transcript_548 other downstream 3767 26085047 ~ 26085118 (+) True trnah-gug_6
unassigned_transcript_549 other downstream 5599 26086879 ~ 26086959 (+) True trnas-aga_54