RNA id: unassigned_transcript_558


Basic Information

Item Value
RNA id unassigned_transcript_558
length 82
RNA type tRNA
GC content 0.57
exon number 1
gene id trnas-uga_54
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26096489 ~ 26096570 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtagtcgtggccgagaggttaaggctatggacttgaaatccattggggtctccctgcgcaggttcgaaccctgccgactacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250606.1 lncRNA upstream 179290 25916389 ~ 25917199 (+) True LOC122342592
TU46343 lncRNA upstream 278925 25817071 ~ 25817564 (+) True G31388
TU46346 lncRNA upstream 279034 25817031 ~ 25817455 (+) False G31388
TU46344 lncRNA upstream 279034 25817071 ~ 25817455 (+) False G31388
TU46335 lncRNA upstream 308588 25787380 ~ 25787901 (+) True G31380
XR_006250570.1 lncRNA downstream 64921 26161491 ~ 26163397 (+) True LOC122342452
TU46361 lncRNA downstream 339778 26436348 ~ 26436599 (+) True G31403
TU46362 lncRNA downstream 346936 26443506 ~ 26443991 (+) True G31404
TU46370 lncRNA downstream 382146 26478716 ~ 26478933 (+) True G31412
XR_006250760.1 lncRNA downstream 672361 26768931 ~ 26769820 (+) True LOC122343359
XM_043236137.1 mRNA upstream 118866 25974877 ~ 25977623 (+) True LOC122342357
XM_043236264.1 mRNA upstream 367838 25711662 ~ 25728651 (+) True col9a3
XM_043237791.1 mRNA upstream 386852 25703831 ~ 25709637 (+) True ogfr
XM_043237792.1 mRNA upstream 386852 25703962 ~ 25709637 (+) False ogfr
XM_043236871.1 mRNA upstream 410617 25636264 ~ 25685872 (+) False LOC122342771
XM_043236141.1 mRNA downstream 76624 26173194 ~ 26177618 (+) True LOC122342360
XM_043236142.1 mRNA downstream 286346 26382916 ~ 26427239 (+) True LOC122342362
XM_043236145.1 mRNA downstream 668383 26764953 ~ 26767173 (+) True LOC122342366
XM_043236148.1 mRNA downstream 908131 27004701 ~ 27006306 (+) True LOC122342369
XM_043236149.1 mRNA downstream 1111166 27207736 ~ 27210602 (+) True LOC122342370
unassigned_transcript_557 other upstream 266 26096142 ~ 26096223 (+) True trnas-aga_56
unassigned_transcript_556 other upstream 2747 26093670 ~ 26093742 (+) True trnak-uuu_49
unassigned_transcript_555 other upstream 4590 26091818 ~ 26091899 (+) True trnas-aga_55
unassigned_transcript_554 other upstream 5408 26091009 ~ 26091081 (+) True trnak-uuu_48
unassigned_transcript_552 other upstream 6903 26089505 ~ 26089586 (+) True trnas-uga_53
unassigned_transcript_560 other downstream 1425 26097995 ~ 26098067 (+) True trnak-uuu_50
unassigned_transcript_561 other downstream 1962 26098532 ~ 26098613 (+) True trnas-uga_55
unassigned_transcript_562 other downstream 4277 26100847 ~ 26100926 (+) True trnas-aga_57
unassigned_transcript_563 other downstream 4622 26101192 ~ 26101273 (+) True trnas-uga_56
unassigned_transcript_564 other downstream 6129 26102699 ~ 26102771 (+) True trnak-uuu_51