RNA id: unassigned_transcript_570


Basic Information

Item Value
RNA id unassigned_transcript_570
length 82
RNA type tRNA
GC content 0.59
exon number 1
gene id trnas-aga_58
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26108316 ~ 26108397 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtagtcgtggccgagtggttaaggcgatggactagaaatccattggggtctccccgcgcaggttcgaatcctgccgactacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250606.1 lncRNA upstream 191117 25916389 ~ 25917199 (+) True LOC122342592
TU46343 lncRNA upstream 290752 25817071 ~ 25817564 (+) True G31388
TU46346 lncRNA upstream 290861 25817031 ~ 25817455 (+) False G31388
TU46344 lncRNA upstream 290861 25817071 ~ 25817455 (+) False G31388
TU46335 lncRNA upstream 320415 25787380 ~ 25787901 (+) True G31380
XR_006250570.1 lncRNA downstream 53094 26161491 ~ 26163397 (+) True LOC122342452
TU46361 lncRNA downstream 327951 26436348 ~ 26436599 (+) True G31403
TU46362 lncRNA downstream 335109 26443506 ~ 26443991 (+) True G31404
TU46370 lncRNA downstream 370319 26478716 ~ 26478933 (+) True G31412
XR_006250760.1 lncRNA downstream 660534 26768931 ~ 26769820 (+) True LOC122343359
XM_043236137.1 mRNA upstream 130693 25974877 ~ 25977623 (+) True LOC122342357
XM_043236264.1 mRNA upstream 379665 25711662 ~ 25728651 (+) True col9a3
XM_043237791.1 mRNA upstream 398679 25703831 ~ 25709637 (+) True ogfr
XM_043237792.1 mRNA upstream 398679 25703962 ~ 25709637 (+) False ogfr
XM_043236871.1 mRNA upstream 422444 25636264 ~ 25685872 (+) False LOC122342771
XM_043236141.1 mRNA downstream 64797 26173194 ~ 26177618 (+) True LOC122342360
XM_043236142.1 mRNA downstream 274519 26382916 ~ 26427239 (+) True LOC122342362
XM_043236145.1 mRNA downstream 656556 26764953 ~ 26767173 (+) True LOC122342366
XM_043236148.1 mRNA downstream 896304 27004701 ~ 27006306 (+) True LOC122342369
XM_043236149.1 mRNA downstream 1099339 27207736 ~ 27210602 (+) True LOC122342370
unassigned_transcript_569 other upstream 737 26107507 ~ 26107579 (+) True trnak-uuu_54
unassigned_transcript_568 other upstream 919 26107316 ~ 26107397 (+) True trnas-uga_58
unassigned_transcript_567 other upstream 1467 26106777 ~ 26106849 (+) True trnak-uuu_53
unassigned_transcript_566 other upstream 3507 26104737 ~ 26104809 (+) True trnak-uuu_52
unassigned_transcript_565 other upstream 5002 26103233 ~ 26103314 (+) True trnas-uga_57
unassigned_transcript_571 other downstream 265 26108662 ~ 26108743 (+) True trnas-uga_59
unassigned_transcript_572 other downstream 2567 26110964 ~ 26111045 (+) True trnas-aga_59
unassigned_transcript_573 other downstream 2912 26111309 ~ 26111389 (+) True trnas-uga_60
unassigned_transcript_574 other downstream 6875 26115272 ~ 26115344 (+) True trnak-uuu_55
unassigned_transcript_575 other downstream 7684 26116081 ~ 26116162 (+) True trnas-aga_60