RNA id: unassigned_transcript_578


Basic Information

Item Value
RNA id unassigned_transcript_578
length 72
RNA type tRNA
GC content 0.60
exon number 1
gene id trnah-gug_8
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26119747 ~ 26119818 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gccgtgatcgtatagtggttagtactctgcgttgtggccgcagcaaccccggttcgaatccgggtcacggca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250606.1 lncRNA upstream 202548 25916389 ~ 25917199 (+) True LOC122342592
TU46343 lncRNA upstream 302183 25817071 ~ 25817564 (+) True G31388
TU46346 lncRNA upstream 302292 25817031 ~ 25817455 (+) False G31388
TU46344 lncRNA upstream 302292 25817071 ~ 25817455 (+) False G31388
TU46335 lncRNA upstream 331846 25787380 ~ 25787901 (+) True G31380
XR_006250570.1 lncRNA downstream 41673 26161491 ~ 26163397 (+) True LOC122342452
TU46361 lncRNA downstream 316530 26436348 ~ 26436599 (+) True G31403
TU46362 lncRNA downstream 323688 26443506 ~ 26443991 (+) True G31404
TU46370 lncRNA downstream 358898 26478716 ~ 26478933 (+) True G31412
XR_006250760.1 lncRNA downstream 649113 26768931 ~ 26769820 (+) True LOC122343359
XM_043236137.1 mRNA upstream 142124 25974877 ~ 25977623 (+) True LOC122342357
XM_043236264.1 mRNA upstream 391096 25711662 ~ 25728651 (+) True col9a3
XM_043237791.1 mRNA upstream 410110 25703831 ~ 25709637 (+) True ogfr
XM_043237792.1 mRNA upstream 410110 25703962 ~ 25709637 (+) False ogfr
XM_043236871.1 mRNA upstream 433875 25636264 ~ 25685872 (+) False LOC122342771
XM_043236141.1 mRNA downstream 53376 26173194 ~ 26177618 (+) True LOC122342360
XM_043236142.1 mRNA downstream 263098 26382916 ~ 26427239 (+) True LOC122342362
XM_043236145.1 mRNA downstream 645135 26764953 ~ 26767173 (+) True LOC122342366
XM_043236148.1 mRNA downstream 884883 27004701 ~ 27006306 (+) True LOC122342369
XM_043236149.1 mRNA downstream 1087918 27207736 ~ 27210602 (+) True LOC122342370
unassigned_transcript_577 other upstream 1741 26117934 ~ 26118006 (+) True trnak-uuu_56
unassigned_transcript_576 other upstream 3239 26116427 ~ 26116508 (+) True trnas-uga_61
unassigned_transcript_575 other upstream 3585 26116081 ~ 26116162 (+) True trnas-aga_60
unassigned_transcript_574 other upstream 4403 26115272 ~ 26115344 (+) True trnak-uuu_55
unassigned_transcript_573 other upstream 8358 26111309 ~ 26111389 (+) True trnas-uga_60
unassigned_transcript_579 other downstream 238 26120056 ~ 26120128 (+) True trnak-uuu_57
unassigned_transcript_580 other downstream 1048 26120866 ~ 26120946 (+) True trnas-aga_61
unassigned_transcript_581 other downstream 1394 26121212 ~ 26121293 (+) True trnas-uga_62
unassigned_transcript_582 other downstream 2582 26122400 ~ 26122471 (+) True trnah-gug_9
unassigned_transcript_583 other downstream 2895 26122713 ~ 26122785 (+) True trnak-uuu_58