RNA id: unassigned_transcript_592


Basic Information

Item Value
RNA id unassigned_transcript_592
length 81
RNA type tRNA
GC content 0.58
exon number 1
gene id trnas-aga_64
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26134019 ~ 26134099 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtagtcgtggccgagtggttaaggcgatggactagaaatccattggggtctcccgcgcaggttcgaatcctgccgactacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250606.1 lncRNA upstream 216820 25916389 ~ 25917199 (+) True LOC122342592
TU46343 lncRNA upstream 316455 25817071 ~ 25817564 (+) True G31388
TU46346 lncRNA upstream 316564 25817031 ~ 25817455 (+) False G31388
TU46344 lncRNA upstream 316564 25817071 ~ 25817455 (+) False G31388
TU46335 lncRNA upstream 346118 25787380 ~ 25787901 (+) True G31380
XR_006250570.1 lncRNA downstream 27392 26161491 ~ 26163397 (+) True LOC122342452
TU46361 lncRNA downstream 302249 26436348 ~ 26436599 (+) True G31403
TU46362 lncRNA downstream 309407 26443506 ~ 26443991 (+) True G31404
TU46370 lncRNA downstream 344617 26478716 ~ 26478933 (+) True G31412
XR_006250760.1 lncRNA downstream 634832 26768931 ~ 26769820 (+) True LOC122343359
XM_043236137.1 mRNA upstream 156396 25974877 ~ 25977623 (+) True LOC122342357
XM_043236264.1 mRNA upstream 405368 25711662 ~ 25728651 (+) True col9a3
XM_043237791.1 mRNA upstream 424382 25703831 ~ 25709637 (+) True ogfr
XM_043237792.1 mRNA upstream 424382 25703962 ~ 25709637 (+) False ogfr
XM_043236871.1 mRNA upstream 448147 25636264 ~ 25685872 (+) False LOC122342771
XM_043236141.1 mRNA downstream 39095 26173194 ~ 26177618 (+) True LOC122342360
XM_043236142.1 mRNA downstream 248817 26382916 ~ 26427239 (+) True LOC122342362
XM_043236145.1 mRNA downstream 630854 26764953 ~ 26767173 (+) True LOC122342366
XM_043236148.1 mRNA downstream 870602 27004701 ~ 27006306 (+) True LOC122342369
XM_043236149.1 mRNA downstream 1073637 27207736 ~ 27210602 (+) True LOC122342370
unassigned_transcript_590 other upstream 2101 26131837 ~ 26131918 (+) True trnas-uga_65
unassigned_transcript_589 other upstream 2448 26131490 ~ 26131571 (+) True trnas-aga_63
unassigned_transcript_588 other upstream 3262 26130685 ~ 26130757 (+) True trnak-uuu_60
unassigned_transcript_587 other upstream 4758 26129180 ~ 26129261 (+) True trnas-uga_64
unassigned_transcript_586 other upstream 8577 26125370 ~ 26125442 (+) True trnak-uuu_59
unassigned_transcript_593 other downstream 266 26134365 ~ 26134446 (+) True trnas-cga_1
unassigned_transcript_594 other downstream 1465 26135564 ~ 26135635 (+) True trnah-gug_10
unassigned_transcript_595 other downstream 2581 26136680 ~ 26136761 (+) True trnas-aga_65
unassigned_transcript_596 other downstream 2927 26137026 ~ 26137107 (+) True trnas-cga_2
unassigned_transcript_597 other downstream 4428 26138527 ~ 26138599 (+) True trnak-uuu_61