RNA id: unassigned_transcript_609


Basic Information

Item Value
RNA id unassigned_transcript_609
length 73
RNA type tRNA
GC content 0.55
exon number 1
gene id trnak-uuu_66
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26154551 ~ 26154623 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gcctggatagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcgggcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250606.1 lncRNA upstream 237352 25916389 ~ 25917199 (+) True LOC122342592
TU46343 lncRNA upstream 336987 25817071 ~ 25817564 (+) True G31388
TU46346 lncRNA upstream 337096 25817031 ~ 25817455 (+) False G31388
TU46344 lncRNA upstream 337096 25817071 ~ 25817455 (+) False G31388
TU46335 lncRNA upstream 366650 25787380 ~ 25787901 (+) True G31380
XR_006250570.1 lncRNA downstream 6868 26161491 ~ 26163397 (+) True LOC122342452
TU46361 lncRNA downstream 281725 26436348 ~ 26436599 (+) True G31403
TU46362 lncRNA downstream 288883 26443506 ~ 26443991 (+) True G31404
TU46370 lncRNA downstream 324093 26478716 ~ 26478933 (+) True G31412
XR_006250760.1 lncRNA downstream 614308 26768931 ~ 26769820 (+) True LOC122343359
XM_043236137.1 mRNA upstream 176928 25974877 ~ 25977623 (+) True LOC122342357
XM_043236264.1 mRNA upstream 425900 25711662 ~ 25728651 (+) True col9a3
XM_043237791.1 mRNA upstream 444914 25703831 ~ 25709637 (+) True ogfr
XM_043237792.1 mRNA upstream 444914 25703962 ~ 25709637 (+) False ogfr
XM_043236871.1 mRNA upstream 468679 25636264 ~ 25685872 (+) False LOC122342771
XM_043236141.1 mRNA downstream 18571 26173194 ~ 26177618 (+) True LOC122342360
XM_043236142.1 mRNA downstream 228293 26382916 ~ 26427239 (+) True LOC122342362
XM_043236145.1 mRNA downstream 610330 26764953 ~ 26767173 (+) True LOC122342366
XM_043236148.1 mRNA downstream 850078 27004701 ~ 27006306 (+) True LOC122342369
XM_043236149.1 mRNA downstream 1053113 27207736 ~ 27210602 (+) True LOC122342370
unassigned_transcript_608 other upstream 1765 26152705 ~ 26152786 (+) True trnas-aga_69
unassigned_transcript_607 other upstream 2585 26151894 ~ 26151966 (+) True trnak-uuu_65
unassigned_transcript_606 other upstream 4423 26150047 ~ 26150128 (+) True trnas-aga_68
unassigned_transcript_605 other upstream 7787 26146692 ~ 26146764 (+) True trnak-uuu_64
unassigned_transcript_604 other upstream 9203 26145276 ~ 26145348 (+) True trnak-uuu_63
unassigned_transcript_611 other downstream 1745 26156368 ~ 26156439 (+) True trnah-gug_13
unassigned_transcript_612 other downstream 2058 26156681 ~ 26156753 (+) True trnak-uuu_67
unassigned_transcript_613 other downstream 3873 26158496 ~ 26158567 (+) True trnah-gug_14
unassigned_transcript_614 other downstream 4184 26158807 ~ 26158879 (+) True trnak-uuu_68
XR_006250888.1 other downstream 13276 26167899 ~ 26168039 (+) True LOC122343906