RNA id: unassigned_transcript_720


Basic Information

Item Value
RNA id unassigned_transcript_720
length 73
RNA type tRNA
GC content 0.55
exon number 2
gene id trnay-gua_20
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26293917 ~ 26294003 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTTcgatagctcagttggtagagcggaGGACTGTAGATCCTTAGGTCGCTGGTTCAACTCCGGCTCGAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46357 lncRNA downstream 55679 26237920 ~ 26238238 (-) True G31399
XR_006250568.1 lncRNA downstream 272533 26020548 ~ 26021384 (-) True LOC122342449
XR_006250768.1 lncRNA downstream 374507 25918811 ~ 25919410 (-) True LOC122343400
TU46348 lncRNA downstream 377960 25915697 ~ 25915957 (-) True G31390
TU46342 lncRNA downstream 478692 25813904 ~ 25815225 (-) True G31387
XR_006250605.1 lncRNA upstream 9659 26303662 ~ 26304672 (-) True LOC122342589
TU46360 lncRNA upstream 134149 26428152 ~ 26433786 (-) True G31402
TU46371 lncRNA upstream 184713 26478716 ~ 26478933 (-) True G31413
XR_006250546.1 lncRNA upstream 394610 26688613 ~ 26689452 (-) True LOC122342214
XR_006250601.1 lncRNA upstream 437657 26731660 ~ 26732626 (-) True LOC122342580
XM_043236140.1 mRNA downstream 267810 26023937 ~ 26026107 (-) True LOC122342359
XM_043236138.1 mRNA downstream 270673 26022144 ~ 26023244 (-) True LOC122342358
XM_043236136.1 mRNA downstream 338296 25952760 ~ 25955621 (-) True LOC122342356
XM_043237668.1 mRNA downstream 515396 25762532 ~ 25778521 (-) True hm13
XM_043236143.1 mRNA upstream 395981 26689984 ~ 26691677 (-) True LOC122342363
XM_043236144.1 mRNA upstream 398618 26692621 ~ 26693546 (-) True LOC122342364
XM_043236146.1 mRNA upstream 571770 26865773 ~ 26869148 (-) True LOC122342367
XM_043236245.1 mRNA upstream 1089750 27383753 ~ 27389398 (-) True LOC122342454
XM_043238050.1 mRNA upstream 1115085 27409088 ~ 27415650 (-) True flot1a
unassigned_transcript_718 other downstream 3709 26290136 ~ 26290208 (-) True trnar-acg_20
unassigned_transcript_717 other downstream 4063 26289783 ~ 26289854 (-) True trnae-uuc_17
unassigned_transcript_716 other downstream 4260 26289571 ~ 26289657 (-) True trnay-gua_19
unassigned_transcript_715 other downstream 8048 26285797 ~ 26285869 (-) True trnar-acg_19
unassigned_transcript_714 other downstream 8402 26285444 ~ 26285515 (-) True trnae-uuc_16
unassigned_transcript_721 other upstream 120 26294123 ~ 26294194 (-) True trnae-uuc_18
unassigned_transcript_722 other upstream 471 26294474 ~ 26294546 (-) True trnar-acg_21
unassigned_transcript_724 other upstream 4241 26298244 ~ 26298330 (-) True trnay-gua_21
unassigned_transcript_725 other upstream 4802 26298805 ~ 26298877 (-) True trnar-acg_22
unassigned_transcript_727 other upstream 5656 26299659 ~ 26299746 (-) True trnay-gua_22

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) unassigned_transcript_944 True 73 tRNA 0.55 2 NC_053127.1 8751824 ~ 8751912 (-)
tiger barb (Puntius tetrazona) unassigned_transcript_944 True 72 tRNA 0.58 1 NC_056702.1 27080059 ~ 27080130 (+)