RNA id: unassigned_transcript_781


Basic Information

Item Value
RNA id unassigned_transcript_781
length 82
RNA type tRNA
GC content 0.57
exon number 1
gene id trnas-aga_85
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26533139 ~ 26533220 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtagtcgtggccgagtggttaaggcgatggactagaaatccattggggtctccccacgcaggttcgaatcctgccgactacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46370 lncRNA upstream 54206 26478716 ~ 26478933 (+) True G31412
TU46362 lncRNA upstream 89148 26443506 ~ 26443991 (+) True G31404
TU46361 lncRNA upstream 96540 26436348 ~ 26436599 (+) True G31403
XR_006250570.1 lncRNA upstream 369742 26161491 ~ 26163397 (+) True LOC122342452
XR_006250606.1 lncRNA upstream 615940 25916389 ~ 25917199 (+) True LOC122342592
XR_006250760.1 lncRNA downstream 235711 26768931 ~ 26769820 (+) True LOC122343359
TU46380 lncRNA downstream 246073 26779293 ~ 26779606 (+) True G31420
TU46382 lncRNA downstream 334972 26868192 ~ 26868471 (+) True G31422
TU46384 lncRNA downstream 368492 26901712 ~ 26902005 (+) True G31424
XR_006250602.1 lncRNA downstream 400120 26933340 ~ 26934351 (+) True LOC122342584
XM_043236142.1 mRNA upstream 105900 26382916 ~ 26427239 (+) True LOC122342362
XM_043236141.1 mRNA upstream 355521 26173194 ~ 26177618 (+) True LOC122342360
XM_043236137.1 mRNA upstream 555516 25974877 ~ 25977623 (+) True LOC122342357
XM_043236264.1 mRNA upstream 804488 25711662 ~ 25728651 (+) True col9a3
XM_043237792.1 mRNA upstream 823502 25703962 ~ 25709637 (+) False ogfr
XM_043236145.1 mRNA downstream 231733 26764953 ~ 26767173 (+) True LOC122342366
XM_043236148.1 mRNA downstream 471481 27004701 ~ 27006306 (+) True LOC122342369
XM_043236149.1 mRNA downstream 674516 27207736 ~ 27210602 (+) True LOC122342370
XM_043236327.1 mRNA downstream 823592 27356812 ~ 27358163 (+) True LOC122342494
XM_043236150.1 mRNA downstream 830798 27364018 ~ 27371196 (+) True LOC122342372
unassigned_transcript_780 other upstream 736 26532331 ~ 26532403 (+) True trnak-uuu_81
unassigned_transcript_779 other upstream 1048 26532020 ~ 26532091 (+) True trnah-gug_16
unassigned_transcript_778 other upstream 2235 26530823 ~ 26530904 (+) True trnas-uga_81
unassigned_transcript_777 other upstream 2582 26530476 ~ 26530557 (+) True trnas-aga_84
unassigned_transcript_776 other upstream 3967 26529090 ~ 26529172 (+) True trnas-aga_83
unassigned_transcript_782 other downstream 266 26533486 ~ 26533569 (+) True trnas-uga_82
unassigned_transcript_783 other downstream 1462 26534682 ~ 26534753 (+) True trnah-gug_17
unassigned_transcript_784 other downstream 2489 26535709 ~ 26535781 (+) True trnak-uuu_82
unassigned_transcript_785 other downstream 3296 26536516 ~ 26536597 (+) True trnas-aga_86
unassigned_transcript_786 other downstream 3639 26536859 ~ 26536940 (+) True trnas-uga_83