RNA id: unassigned_transcript_786


Basic Information

Item Value
RNA id unassigned_transcript_786
length 82
RNA type tRNA
GC content 0.60
exon number 1
gene id trnas-uga_83
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26536859 ~ 26536940 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtagtcgtggccgagaggttaaggcgatggacttgaaatccattggggtctcccgcgcgaggttcgaaccctgccgactacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46370 lncRNA upstream 57926 26478716 ~ 26478933 (+) True G31412
TU46362 lncRNA upstream 92868 26443506 ~ 26443991 (+) True G31404
TU46361 lncRNA upstream 100260 26436348 ~ 26436599 (+) True G31403
XR_006250570.1 lncRNA upstream 373462 26161491 ~ 26163397 (+) True LOC122342452
XR_006250606.1 lncRNA upstream 619660 25916389 ~ 25917199 (+) True LOC122342592
XR_006250760.1 lncRNA downstream 231991 26768931 ~ 26769820 (+) True LOC122343359
TU46380 lncRNA downstream 242353 26779293 ~ 26779606 (+) True G31420
TU46382 lncRNA downstream 331252 26868192 ~ 26868471 (+) True G31422
TU46384 lncRNA downstream 364772 26901712 ~ 26902005 (+) True G31424
XR_006250602.1 lncRNA downstream 396400 26933340 ~ 26934351 (+) True LOC122342584
XM_043236142.1 mRNA upstream 109620 26382916 ~ 26427239 (+) True LOC122342362
XM_043236141.1 mRNA upstream 359241 26173194 ~ 26177618 (+) True LOC122342360
XM_043236137.1 mRNA upstream 559236 25974877 ~ 25977623 (+) True LOC122342357
XM_043236264.1 mRNA upstream 808208 25711662 ~ 25728651 (+) True col9a3
XM_043237792.1 mRNA upstream 827222 25703962 ~ 25709637 (+) False ogfr
XM_043236145.1 mRNA downstream 228013 26764953 ~ 26767173 (+) True LOC122342366
XM_043236148.1 mRNA downstream 467761 27004701 ~ 27006306 (+) True LOC122342369
XM_043236149.1 mRNA downstream 670796 27207736 ~ 27210602 (+) True LOC122342370
XM_043236327.1 mRNA downstream 819872 27356812 ~ 27358163 (+) True LOC122342494
XM_043236150.1 mRNA downstream 827078 27364018 ~ 27371196 (+) True LOC122342372
unassigned_transcript_785 other upstream 262 26536516 ~ 26536597 (+) True trnas-aga_86
unassigned_transcript_784 other upstream 1078 26535709 ~ 26535781 (+) True trnak-uuu_82
unassigned_transcript_783 other upstream 2106 26534682 ~ 26534753 (+) True trnah-gug_17
unassigned_transcript_782 other upstream 3290 26533486 ~ 26533569 (+) True trnas-uga_82
unassigned_transcript_781 other upstream 3639 26533139 ~ 26533220 (+) True trnas-aga_85
unassigned_transcript_787 other downstream 1429 26538369 ~ 26538441 (+) True trnak-uuu_83
unassigned_transcript_788 other downstream 2238 26539178 ~ 26539258 (+) True trnas-aga_87
unassigned_transcript_789 other downstream 2579 26539519 ~ 26539600 (+) True trnas-uga_84
unassigned_transcript_790 other downstream 4087 26541027 ~ 26541099 (+) True trnak-uuu_84
unassigned_transcript_791 other downstream 4892 26541832 ~ 26541913 (+) True trnas-aga_88