RNA id: unassigned_transcript_789


Basic Information

Item Value
RNA id unassigned_transcript_789
length 82
RNA type tRNA
GC content 0.60
exon number 1
gene id trnas-uga_84
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26539519 ~ 26539600 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtagtcgtggccgagaggttaaggcgatggacttgaaatccattggggtctccccgcgcaggttcgaaccctgccgactacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46370 lncRNA upstream 60586 26478716 ~ 26478933 (+) True G31412
TU46362 lncRNA upstream 95528 26443506 ~ 26443991 (+) True G31404
TU46361 lncRNA upstream 102920 26436348 ~ 26436599 (+) True G31403
XR_006250570.1 lncRNA upstream 376122 26161491 ~ 26163397 (+) True LOC122342452
XR_006250606.1 lncRNA upstream 622320 25916389 ~ 25917199 (+) True LOC122342592
XR_006250760.1 lncRNA downstream 229331 26768931 ~ 26769820 (+) True LOC122343359
TU46380 lncRNA downstream 239693 26779293 ~ 26779606 (+) True G31420
TU46382 lncRNA downstream 328592 26868192 ~ 26868471 (+) True G31422
TU46384 lncRNA downstream 362112 26901712 ~ 26902005 (+) True G31424
XR_006250602.1 lncRNA downstream 393740 26933340 ~ 26934351 (+) True LOC122342584
XM_043236142.1 mRNA upstream 112280 26382916 ~ 26427239 (+) True LOC122342362
XM_043236141.1 mRNA upstream 361901 26173194 ~ 26177618 (+) True LOC122342360
XM_043236137.1 mRNA upstream 561896 25974877 ~ 25977623 (+) True LOC122342357
XM_043236264.1 mRNA upstream 810868 25711662 ~ 25728651 (+) True col9a3
XM_043237792.1 mRNA upstream 829882 25703962 ~ 25709637 (+) False ogfr
XM_043236145.1 mRNA downstream 225353 26764953 ~ 26767173 (+) True LOC122342366
XM_043236148.1 mRNA downstream 465101 27004701 ~ 27006306 (+) True LOC122342369
XM_043236149.1 mRNA downstream 668136 27207736 ~ 27210602 (+) True LOC122342370
XM_043236327.1 mRNA downstream 817212 27356812 ~ 27358163 (+) True LOC122342494
XM_043236150.1 mRNA downstream 824418 27364018 ~ 27371196 (+) True LOC122342372
unassigned_transcript_788 other upstream 261 26539178 ~ 26539258 (+) True trnas-aga_87
unassigned_transcript_787 other upstream 1078 26538369 ~ 26538441 (+) True trnak-uuu_83
unassigned_transcript_786 other upstream 2579 26536859 ~ 26536940 (+) True trnas-uga_83
unassigned_transcript_785 other upstream 2922 26536516 ~ 26536597 (+) True trnas-aga_86
unassigned_transcript_784 other upstream 3738 26535709 ~ 26535781 (+) True trnak-uuu_82
unassigned_transcript_790 other downstream 1427 26541027 ~ 26541099 (+) True trnak-uuu_84
unassigned_transcript_791 other downstream 2232 26541832 ~ 26541913 (+) True trnas-aga_88
unassigned_transcript_792 other downstream 2577 26542177 ~ 26542257 (+) True trnas-uga_85
unassigned_transcript_793 other downstream 4075 26543675 ~ 26543747 (+) True trnak-uuu_85
unassigned_transcript_822 other downstream 103463 26643063 ~ 26643135 (+) True trnav-aac