RNA id: unassigned_transcript_790


Basic Information

Item Value
RNA id unassigned_transcript_790
length 73
RNA type tRNA
GC content 0.55
exon number 1
gene id trnak-uuu_84
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26541027 ~ 26541099 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gcctggatagctcagtcggtagagcatcagacttttaatctgagggtccagggttcaagtccctgttcgggcg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46370 lncRNA upstream 62094 26478716 ~ 26478933 (+) True G31412
TU46362 lncRNA upstream 97036 26443506 ~ 26443991 (+) True G31404
TU46361 lncRNA upstream 104428 26436348 ~ 26436599 (+) True G31403
XR_006250570.1 lncRNA upstream 377630 26161491 ~ 26163397 (+) True LOC122342452
XR_006250606.1 lncRNA upstream 623828 25916389 ~ 25917199 (+) True LOC122342592
XR_006250760.1 lncRNA downstream 227832 26768931 ~ 26769820 (+) True LOC122343359
TU46380 lncRNA downstream 238194 26779293 ~ 26779606 (+) True G31420
TU46382 lncRNA downstream 327093 26868192 ~ 26868471 (+) True G31422
TU46384 lncRNA downstream 360613 26901712 ~ 26902005 (+) True G31424
XR_006250602.1 lncRNA downstream 392241 26933340 ~ 26934351 (+) True LOC122342584
XM_043236142.1 mRNA upstream 113788 26382916 ~ 26427239 (+) True LOC122342362
XM_043236141.1 mRNA upstream 363409 26173194 ~ 26177618 (+) True LOC122342360
XM_043236137.1 mRNA upstream 563404 25974877 ~ 25977623 (+) True LOC122342357
XM_043236264.1 mRNA upstream 812376 25711662 ~ 25728651 (+) True col9a3
XM_043237792.1 mRNA upstream 831390 25703962 ~ 25709637 (+) False ogfr
XM_043236145.1 mRNA downstream 223854 26764953 ~ 26767173 (+) True LOC122342366
XM_043236148.1 mRNA downstream 463602 27004701 ~ 27006306 (+) True LOC122342369
XM_043236149.1 mRNA downstream 666637 27207736 ~ 27210602 (+) True LOC122342370
XM_043236327.1 mRNA downstream 815713 27356812 ~ 27358163 (+) True LOC122342494
XM_043236150.1 mRNA downstream 822919 27364018 ~ 27371196 (+) True LOC122342372
unassigned_transcript_789 other upstream 1427 26539519 ~ 26539600 (+) True trnas-uga_84
unassigned_transcript_788 other upstream 1769 26539178 ~ 26539258 (+) True trnas-aga_87
unassigned_transcript_787 other upstream 2586 26538369 ~ 26538441 (+) True trnak-uuu_83
unassigned_transcript_786 other upstream 4087 26536859 ~ 26536940 (+) True trnas-uga_83
unassigned_transcript_785 other upstream 4430 26536516 ~ 26536597 (+) True trnas-aga_86
unassigned_transcript_791 other downstream 733 26541832 ~ 26541913 (+) True trnas-aga_88
unassigned_transcript_792 other downstream 1078 26542177 ~ 26542257 (+) True trnas-uga_85
unassigned_transcript_793 other downstream 2576 26543675 ~ 26543747 (+) True trnak-uuu_85
unassigned_transcript_822 other downstream 101964 26643063 ~ 26643135 (+) True trnav-aac
unassigned_transcript_823 other downstream 103033 26644132 ~ 26644204 (+) True trnav-aac_1