RNA id: unassigned_transcript_792


Basic Information

Item Value
RNA id unassigned_transcript_792
length 81
RNA type tRNA
GC content 0.59
exon number 1
gene id trnas-uga_85
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26542177 ~ 26542257 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtagtcgtggccgagaggttaaggcgatggacttgaaatccattggggtctcccgcgcaggttcgaaccctgccgactacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46370 lncRNA upstream 63244 26478716 ~ 26478933 (+) True G31412
TU46362 lncRNA upstream 98186 26443506 ~ 26443991 (+) True G31404
TU46361 lncRNA upstream 105578 26436348 ~ 26436599 (+) True G31403
XR_006250570.1 lncRNA upstream 378780 26161491 ~ 26163397 (+) True LOC122342452
XR_006250606.1 lncRNA upstream 624978 25916389 ~ 25917199 (+) True LOC122342592
XR_006250760.1 lncRNA downstream 226674 26768931 ~ 26769820 (+) True LOC122343359
TU46380 lncRNA downstream 237036 26779293 ~ 26779606 (+) True G31420
TU46382 lncRNA downstream 325935 26868192 ~ 26868471 (+) True G31422
TU46384 lncRNA downstream 359455 26901712 ~ 26902005 (+) True G31424
XR_006250602.1 lncRNA downstream 391083 26933340 ~ 26934351 (+) True LOC122342584
XM_043236142.1 mRNA upstream 114938 26382916 ~ 26427239 (+) True LOC122342362
XM_043236141.1 mRNA upstream 364559 26173194 ~ 26177618 (+) True LOC122342360
XM_043236137.1 mRNA upstream 564554 25974877 ~ 25977623 (+) True LOC122342357
XM_043236264.1 mRNA upstream 813526 25711662 ~ 25728651 (+) True col9a3
XM_043237792.1 mRNA upstream 832540 25703962 ~ 25709637 (+) False ogfr
XM_043236145.1 mRNA downstream 222696 26764953 ~ 26767173 (+) True LOC122342366
XM_043236148.1 mRNA downstream 462444 27004701 ~ 27006306 (+) True LOC122342369
XM_043236149.1 mRNA downstream 665479 27207736 ~ 27210602 (+) True LOC122342370
XM_043236327.1 mRNA downstream 814555 27356812 ~ 27358163 (+) True LOC122342494
XM_043236150.1 mRNA downstream 821761 27364018 ~ 27371196 (+) True LOC122342372
unassigned_transcript_791 other upstream 264 26541832 ~ 26541913 (+) True trnas-aga_88
unassigned_transcript_790 other upstream 1078 26541027 ~ 26541099 (+) True trnak-uuu_84
unassigned_transcript_789 other upstream 2577 26539519 ~ 26539600 (+) True trnas-uga_84
unassigned_transcript_788 other upstream 2919 26539178 ~ 26539258 (+) True trnas-aga_87
unassigned_transcript_787 other upstream 3736 26538369 ~ 26538441 (+) True trnak-uuu_83
unassigned_transcript_793 other downstream 1418 26543675 ~ 26543747 (+) True trnak-uuu_85
unassigned_transcript_822 other downstream 100806 26643063 ~ 26643135 (+) True trnav-aac
unassigned_transcript_823 other downstream 101875 26644132 ~ 26644204 (+) True trnav-aac_1
unassigned_transcript_824 other downstream 102628 26644885 ~ 26644957 (+) True trnav-cac
unassigned_transcript_825 other downstream 104628 26646885 ~ 26646957 (+) True trnav-aac_2