RNA id: TCONS_00011117


Basic Information

Item Value
RNA id TCONS_00011117
length 820
lncRNA type inter_gene
GC content 0.45
exon number 2
gene id XLOC_005295
representative True

Chromosome Information

Item Value
chromosome id NC_007123.7
NCBI id CM002896.2
chromosome length 49182954
location 18224534 ~ 18227730 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCTTcagttgtcatggcaacagtagAATTCTTTAGCAGGTGAGGGTGTCAACTTTAGAACAGTAAACGTGTCAACTTTAGAACAGTGGTGTGAAGGAAGAAGAAATTGTGGCTGGTTGTTTTTTCAAGCTCTTTCGGTTTACGTGTGTTAAAGTTCTAAATTTCCAACATGGATCTAATCCCCATGCAGAATATTACTCCATCAAGTGCAGAATTTCATGATGAGTCCTCTAAATGTTTTCAAGGCTCTTCGCTGCGTCAGAGACTCTCACAGTCCATCAAATGCTGCTTTATGCTTGGGACAAAAACTCCAGTTCCGAGTGTTCTCATAAGCCCACGAGATCCTGACAGAGCAAAGAAGAGAAAACGTCCCAGGATGATGTTGCTGAGCCCCAACATGCGAGATGAGTCCACCAGGGCAAGGCCAGTTCCTTCTGTGGAAAATGATGGACCCTCCAGTTTTAAGGGTCTACACAAGGACTTCAAAAGACAGGAGGTCTCATTACTATTCCACCCAAGACATCAACACACCATACAGGAAATGAAAAGGAAAGCACAAAGAAAACGACAAGAGGCTGCTCGTGTAACAAATTTGGGACTGGACTGCAATATTTTGGCAAAAAGAGCTGACAGTCAAATTCTACAAATTTTCAATCAGCTAGACAAAATATGGTTCTTCTCACCATGAGAGCAGTCCAGCGAGAACTCCAGCCTCAGAGCACAGGACCAGTGATGGCTCCAGCCCTAGAATGCCAGCCCAGTGTTGCCTCCAGCATCAGAACCCTGGGCCAGTGTAGGCTCCGGAGACTGCTTCACctgta

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00011116 lncRNA downstream 496994 17721801 ~ 17727540 (-) True XLOC_005291
TCONS_00010158 lncRNA downstream 526222 17697132 ~ 17698312 (-) True XLOC_005287
TCONS_00011114 lncRNA downstream 1257726 16964656 ~ 16966808 (-) False XLOC_005273
TCONS_00011115 lncRNA downstream 1257799 16965104 ~ 16966735 (-) True XLOC_005273
TCONS_00011113 lncRNA downstream 1272888 16938808 ~ 16951646 (-) True XLOC_005271
TCONS_00010171 lncRNA upstream 182881 18410611 ~ 18411624 (-) False XLOC_005297
TCONS_00011118 lncRNA upstream 182881 18410611 ~ 18411753 (-) False XLOC_005297
TCONS_00010172 lncRNA upstream 182881 18410611 ~ 18411753 (-) False XLOC_005297
TCONS_00010174 lncRNA upstream 185712 18413442 ~ 18414516 (-) True XLOC_005297
TCONS_00011119 lncRNA upstream 225477 18453207 ~ 18454407 (-) True XLOC_005298
TCONS_00010166 mRNA downstream 327400 17889465 ~ 17897134 (-) True XLOC_005294
TCONS_00010165 mRNA downstream 361067 17815725 ~ 17863467 (-) True XLOC_005293
TCONS_00010164 mRNA downstream 413991 17794284 ~ 17810543 (-) True XLOC_005292
TCONS_00010162 mRNA downstream 512036 17710425 ~ 17712498 (-) False XLOC_005290
TCONS_00010163 mRNA downstream 512141 17710655 ~ 17712393 (-) True XLOC_005290
TCONS_00010167 mRNA upstream 154252 18381982 ~ 18408588 (-) False XLOC_005296
TCONS_00010168 mRNA upstream 154255 18381985 ~ 18393408 (-) False XLOC_005296
TCONS_00010169 mRNA upstream 154558 18382288 ~ 18408566 (-) True XLOC_005296
TCONS_00010170 mRNA upstream 182878 18410608 ~ 18414539 (-) False XLOC_005297
TCONS_00010173 mRNA upstream 183854 18411584 ~ 18414536 (-) False XLOC_005297
TCONS_00010161 other downstream 517633 17706792 ~ 17706901 (-) True XLOC_005289
TCONS_00010135 other downstream 1226092 16997206 ~ 16998442 (-) True XLOC_005275
TCONS_00010131 other downstream 1322775 16901645 ~ 16901759 (-) True XLOC_005269
TCONS_00010127 other downstream 1477987 16743282 ~ 16746547 (-) True XLOC_005265
TCONS_00010126 other downstream 1478218 16743052 ~ 16746316 (-) False XLOC_005265
TCONS_00010183 other upstream 510683 18738413 ~ 18738529 (-) True XLOC_005303
TCONS_00010211 other upstream 1961439 20189169 ~ 20189286 (-) True XLOC_005319
TCONS_00010220 other upstream 2347910 20575640 ~ 20584439 (-) False XLOC_005327
TCONS_00010232 other upstream 3342053 21569783 ~ 21569899 (-) True XLOC_005332
TCONS_00010235 other upstream 3445219 21672949 ~ 21680620 (-) False XLOC_005333

Expression Profile

//