RNA id: unassigned_transcript_824


Basic Information

Item Value
RNA id unassigned_transcript_824
length 73
RNA type tRNA
GC content 0.51
exon number 1
gene id trnav-cac
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26644885 ~ 26644957 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

GTTTCcatagtgtagtggttatcacgttcgcctcacACTCGAAAGGTCCTCGCTTCGAAACCgggtggaaaca

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46370 lncRNA upstream 165952 26478716 ~ 26478933 (+) True G31412
TU46362 lncRNA upstream 200894 26443506 ~ 26443991 (+) True G31404
TU46361 lncRNA upstream 208286 26436348 ~ 26436599 (+) True G31403
XR_006250570.1 lncRNA upstream 481488 26161491 ~ 26163397 (+) True LOC122342452
XR_006250606.1 lncRNA upstream 727686 25916389 ~ 25917199 (+) True LOC122342592
XR_006250760.1 lncRNA downstream 123974 26768931 ~ 26769820 (+) True LOC122343359
TU46380 lncRNA downstream 134336 26779293 ~ 26779606 (+) True G31420
TU46382 lncRNA downstream 223235 26868192 ~ 26868471 (+) True G31422
TU46384 lncRNA downstream 256755 26901712 ~ 26902005 (+) True G31424
XR_006250602.1 lncRNA downstream 288383 26933340 ~ 26934351 (+) True LOC122342584
XM_043236142.1 mRNA upstream 217646 26382916 ~ 26427239 (+) True LOC122342362
XM_043236141.1 mRNA upstream 467267 26173194 ~ 26177618 (+) True LOC122342360
XM_043236137.1 mRNA upstream 667262 25974877 ~ 25977623 (+) True LOC122342357
XM_043236264.1 mRNA upstream 916234 25711662 ~ 25728651 (+) True col9a3
XM_043237792.1 mRNA upstream 935248 25703962 ~ 25709637 (+) False ogfr
XM_043236145.1 mRNA downstream 119996 26764953 ~ 26767173 (+) True LOC122342366
XM_043236148.1 mRNA downstream 359744 27004701 ~ 27006306 (+) True LOC122342369
XM_043236149.1 mRNA downstream 562779 27207736 ~ 27210602 (+) True LOC122342370
XM_043236327.1 mRNA downstream 711855 27356812 ~ 27358163 (+) True LOC122342494
XM_043236150.1 mRNA downstream 719061 27364018 ~ 27371196 (+) True LOC122342372
unassigned_transcript_823 other upstream 681 26644132 ~ 26644204 (+) True trnav-aac_1
unassigned_transcript_822 other upstream 1750 26643063 ~ 26643135 (+) True trnav-aac
unassigned_transcript_793 other upstream 101138 26543675 ~ 26543747 (+) True trnak-uuu_85
unassigned_transcript_792 other upstream 102628 26542177 ~ 26542257 (+) True trnas-uga_85
unassigned_transcript_791 other upstream 102972 26541832 ~ 26541913 (+) True trnas-aga_88
unassigned_transcript_825 other downstream 1928 26646885 ~ 26646957 (+) True trnav-aac_2
unassigned_transcript_860 other downstream 285595 26930552 ~ 26930638 (+) True trnay-gua_25
unassigned_transcript_863 other downstream 308054 26953011 ~ 26953084 (+) True trnar-acg_23
unassigned_transcript_864 other downstream 308603 26953560 ~ 26953646 (+) True trnay-gua_26
unassigned_transcript_866 other downstream 313539 26958496 ~ 26958568 (+) True trnar-acg_24