RNA id: unassigned_transcript_825



Basic Information


Item Value
RNA id unassigned_transcript_825
length 73
RNA type tRNA
GC content 0.49
exon number 1
gene id trnav-aac_2
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26646885 ~ 26646957 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


gtttctgtagtgtactGGTCATCACGTTTGCCTAACACGCGAAAGGGcctcggttcaaaaccgagcagaaaca

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU46370 lncRNA upstream 167952 26478716 ~ 26478933 (+) True G31412
TU46362 lncRNA upstream 202894 26443506 ~ 26443991 (+) True G31404
TU46361 lncRNA upstream 210286 26436348 ~ 26436599 (+) True G31403
XR_006250570.1 lncRNA upstream 483488 26161491 ~ 26163397 (+) True LOC122342452
XR_006250606.1 lncRNA upstream 729686 25916389 ~ 25917199 (+) True LOC122342592
XR_006250760.1 lncRNA downstream 121974 26768931 ~ 26769820 (+) True LOC122343359
TU46380 lncRNA downstream 132336 26779293 ~ 26779606 (+) True G31420
TU46382 lncRNA downstream 221235 26868192 ~ 26868471 (+) True G31422
TU46384 lncRNA downstream 254755 26901712 ~ 26902005 (+) True G31424
XR_006250602.1 lncRNA downstream 286383 26933340 ~ 26934351 (+) True LOC122342584
XM_043236142.1 mRNA upstream 219646 26382916 ~ 26427239 (+) True LOC122342362
XM_043236141.1 mRNA upstream 469267 26173194 ~ 26177618 (+) True LOC122342360
XM_043236137.1 mRNA upstream 669262 25974877 ~ 25977623 (+) True LOC122342357
XM_043236264.1 mRNA upstream 918234 25711662 ~ 25728651 (+) True col9a3
XM_043237792.1 mRNA upstream 937248 25703962 ~ 25709637 (+) False ogfr
XM_043236145.1 mRNA downstream 117996 26764953 ~ 26767173 (+) True LOC122342366
XM_043236148.1 mRNA downstream 357744 27004701 ~ 27006306 (+) True LOC122342369
XM_043236149.1 mRNA downstream 560779 27207736 ~ 27210602 (+) True LOC122342370
XM_043236327.1 mRNA downstream 709855 27356812 ~ 27358163 (+) True LOC122342494
XM_043236150.1 mRNA downstream 717061 27364018 ~ 27371196 (+) True LOC122342372
unassigned_transcript_824 other upstream 1928 26644885 ~ 26644957 (+) True trnav-cac
unassigned_transcript_823 other upstream 2681 26644132 ~ 26644204 (+) True trnav-aac_1
unassigned_transcript_822 other upstream 3750 26643063 ~ 26643135 (+) True trnav-aac
unassigned_transcript_793 other upstream 103138 26543675 ~ 26543747 (+) True trnak-uuu_85
unassigned_transcript_792 other upstream 104628 26542177 ~ 26542257 (+) True trnas-uga_85
unassigned_transcript_860 other downstream 283595 26930552 ~ 26930638 (+) True trnay-gua_25
unassigned_transcript_863 other downstream 306054 26953011 ~ 26953084 (+) True trnar-acg_23
unassigned_transcript_864 other downstream 306603 26953560 ~ 26953646 (+) True trnay-gua_26
unassigned_transcript_866 other downstream 311539 26958496 ~ 26958568 (+) True trnar-acg_24
unassigned_transcript_867 other downstream 311893 26958850 ~ 26958920 (+) True trnae-uuc_19