RNA id: unassigned_transcript_853



Basic Information


Item Value
RNA id unassigned_transcript_853
length 81
RNA type tRNA
GC content 0.58
exon number 1
gene id trnas-uga_105
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26720341 ~ 26720421 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


GTAGTCGTGgtcgagaggttaaggcgatggacttgaaatccattggggtctcccgcgcaggttcgaaccctgccgactacg

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
XR_006250546.1 lncRNA downstream 30889 26688613 ~ 26689452 (-) True LOC122342214
TU46371 lncRNA downstream 241408 26478716 ~ 26478933 (-) True G31413
TU46360 lncRNA downstream 286555 26428152 ~ 26433786 (-) True G31402
XR_006250605.1 lncRNA downstream 415669 26303662 ~ 26304672 (-) True LOC122342589
TU46357 lncRNA downstream 482103 26237920 ~ 26238238 (-) True G31399
XR_006250601.1 lncRNA upstream 11239 26731660 ~ 26732626 (-) True LOC122342580
TU46385 lncRNA upstream 181285 26901706 ~ 26901995 (-) True G31425
TU46386 lncRNA upstream 268166 26988587 ~ 26988954 (-) True G31426
TU46454 lncRNA upstream 640483 27360904 ~ 27406081 (-) False G31462
TU46455 lncRNA upstream 640483 27360904 ~ 27406081 (-) True G31462
XM_043236144.1 mRNA downstream 26795 26692621 ~ 26693546 (-) True LOC122342364
XM_043236143.1 mRNA downstream 28664 26689984 ~ 26691677 (-) True LOC122342363
XM_043236140.1 mRNA downstream 694234 26023937 ~ 26026107 (-) True LOC122342359
XM_043236138.1 mRNA downstream 697097 26022144 ~ 26023244 (-) True LOC122342358
XM_043236136.1 mRNA downstream 764720 25952760 ~ 25955621 (-) True LOC122342356
XM_043236146.1 mRNA upstream 145352 26865773 ~ 26869148 (-) True LOC122342367
XM_043236245.1 mRNA upstream 663332 27383753 ~ 27389398 (-) True LOC122342454
XM_043238050.1 mRNA upstream 688667 27409088 ~ 27415650 (-) True flot1a
XM_043237703.1 mRNA upstream 1226575 27946996 ~ 27951997 (-) True pdk2b
XM_043237697.1 mRNA upstream 1245888 27966309 ~ 27969769 (-) False LOC122343310
unassigned_transcript_852 other downstream 1451 26718818 ~ 26718890 (-) True trnak-uuu_97
unassigned_transcript_851 other downstream 1661 26718599 ~ 26718680 (-) True trnas-uga_104
unassigned_transcript_850 other downstream 2646 26717613 ~ 26717695 (-) True trnas-aga_107
unassigned_transcript_849 other downstream 2991 26717269 ~ 26717350 (-) True trnas-uga_103
unassigned_transcript_848 other downstream 4491 26715778 ~ 26715850 (-) True trnak-uuu_96
unassigned_transcript_854 other upstream 1076 26721497 ~ 26721569 (-) True trnak-uuu_98
unassigned_transcript_855 other upstream 2544 26722965 ~ 26723043 (-) True trnas-aga_108
unassigned_transcript_856 other upstream 3353 26723774 ~ 26723846 (-) True trnak-uuu_99
unassigned_transcript_857 other upstream 5404 26725825 ~ 26725897 (-) True trnak-uuu_100
unassigned_transcript_858 other upstream 6892 26727313 ~ 26727394 (-) True trnas-uga_106