RNA id: unassigned_transcript_865



Basic Information


Item Value
RNA id unassigned_transcript_865
length 71
RNA type tRNA
GC content 0.65
exon number 1
gene id trnae-cuc_29
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26958329 ~ 26958399 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TCCCTGGTGGTCTAGTGGTTAGGATTCGCGCTCTCACCGCCGcggcccgggttcgattcccggtcagggaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU46385 lncRNA downstream 56334 26901706 ~ 26901995 (-) True G31425
XR_006250601.1 lncRNA downstream 225703 26731660 ~ 26732626 (-) True LOC122342580
XR_006250546.1 lncRNA downstream 268877 26688613 ~ 26689452 (-) True LOC122342214
TU46371 lncRNA downstream 479396 26478716 ~ 26478933 (-) True G31413
TU46360 lncRNA downstream 524543 26428152 ~ 26433786 (-) True G31402
TU46386 lncRNA upstream 30188 26988587 ~ 26988954 (-) True G31426
TU46454 lncRNA upstream 402505 27360904 ~ 27406081 (-) False G31462
TU46455 lncRNA upstream 402505 27360904 ~ 27406081 (-) True G31462
TU46462 lncRNA upstream 414870 27373269 ~ 27392000 (-) True G31466
TU46470 lncRNA upstream 440370 27398769 ~ 27400876 (-) True G31472
XM_043236146.1 mRNA downstream 89181 26865773 ~ 26869148 (-) True LOC122342367
XM_043236144.1 mRNA downstream 264783 26692621 ~ 26693546 (-) True LOC122342364
XM_043236143.1 mRNA downstream 266652 26689984 ~ 26691677 (-) True LOC122342363
XM_043236140.1 mRNA downstream 932222 26023937 ~ 26026107 (-) True LOC122342359
XM_043236138.1 mRNA downstream 935085 26022144 ~ 26023244 (-) True LOC122342358
XM_043236245.1 mRNA upstream 425354 27383753 ~ 27389398 (-) True LOC122342454
XM_043238050.1 mRNA upstream 450689 27409088 ~ 27415650 (-) True flot1a
XM_043237703.1 mRNA upstream 988597 27946996 ~ 27951997 (-) True pdk2b
XM_043237697.1 mRNA upstream 1007910 27966309 ~ 27969769 (-) False LOC122343310
XM_043237698.1 mRNA upstream 1007910 27966309 ~ 27969320 (-) True LOC122343310
unassigned_transcript_862 other downstream 5414 26952844 ~ 26952915 (-) True trnae-cuc_28
unassigned_transcript_861 other downstream 19197 26939061 ~ 26939132 (-) True trnae-cuc_27
unassigned_transcript_859 other downstream 222731 26735512 ~ 26735598 (-) True trnay-gua_24
unassigned_transcript_858 other downstream 230935 26727313 ~ 26727394 (-) True trnas-uga_106
unassigned_transcript_857 other downstream 232432 26725825 ~ 26725897 (-) True trnak-uuu_100
unassigned_transcript_875 other upstream 8579 26966978 ~ 26967048 (-) True trnak-cuu_2
unassigned_transcript_879 other upstream 11394 26969793 ~ 26969864 (-) True trnae-cuc_30
unassigned_transcript_882 other upstream 13345 26971744 ~ 26971815 (-) True trnae-cuc_31
unassigned_transcript_886 other upstream 14764 26973163 ~ 26973234 (-) True trnae-cuc_32
unassigned_transcript_899 other upstream 23254 26981653 ~ 26981724 (-) True trnae-cuc_33