RNA id: unassigned_transcript_868


Basic Information

Item Value
RNA id unassigned_transcript_868
length 73
RNA type tRNA
GC content 0.55
exon number 2
gene id trnay-gua_27
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26959042 ~ 26959128 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTTcgatagctcagttggtagagcggaGGACTGTAGATCCTTAGGTTGCTGGTTCGACTCCGGCTCGAAGGA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250602.1 lncRNA upstream 24691 26933340 ~ 26934351 (+) True LOC122342584
TU46384 lncRNA upstream 57037 26901712 ~ 26902005 (+) True G31424
TU46382 lncRNA upstream 90571 26868192 ~ 26868471 (+) True G31422
TU46380 lncRNA upstream 179436 26779293 ~ 26779606 (+) True G31420
XR_006250760.1 lncRNA upstream 189222 26768931 ~ 26769820 (+) True LOC122343359
TU46387 lncRNA downstream 33906 26993034 ~ 26993354 (+) True G31427
TU46388 lncRNA downstream 125189 27084317 ~ 27084707 (+) True G31428
TU46389 lncRNA downstream 238759 27197887 ~ 27198266 (+) True G31429
TU46401 lncRNA downstream 273968 27233096 ~ 27233432 (+) True G31438
TU46404 lncRNA downstream 338408 27297536 ~ 27369182 (+) False LOC122342372
XM_043236145.1 mRNA upstream 191869 26764953 ~ 26767173 (+) True LOC122342366
XM_043236142.1 mRNA upstream 531803 26382916 ~ 26427239 (+) True LOC122342362
XM_043236141.1 mRNA upstream 781424 26173194 ~ 26177618 (+) True LOC122342360
XM_043236137.1 mRNA upstream 981419 25974877 ~ 25977623 (+) True LOC122342357
XM_043236264.1 mRNA upstream 1230391 25711662 ~ 25728651 (+) True col9a3
XM_043236148.1 mRNA downstream 45573 27004701 ~ 27006306 (+) True LOC122342369
XM_043236149.1 mRNA downstream 248608 27207736 ~ 27210602 (+) True LOC122342370
XM_043236327.1 mRNA downstream 397684 27356812 ~ 27358163 (+) True LOC122342494
XM_043236150.1 mRNA downstream 404890 27364018 ~ 27371196 (+) True LOC122342372
XM_043236921.1 mRNA downstream 431211 27390339 ~ 27406088 (+) True LOC122342806
unassigned_transcript_867 other upstream 122 26958850 ~ 26958920 (+) True trnae-uuc_19
unassigned_transcript_866 other upstream 474 26958496 ~ 26958568 (+) True trnar-acg_24
unassigned_transcript_864 other upstream 5396 26953560 ~ 26953646 (+) True trnay-gua_26
unassigned_transcript_863 other upstream 5958 26953011 ~ 26953084 (+) True trnar-acg_23
unassigned_transcript_860 other upstream 28404 26930552 ~ 26930638 (+) True trnay-gua_25
unassigned_transcript_869 other downstream 1137 26960265 ~ 26960336 (+) True trnae-uuc_20
unassigned_transcript_870 other downstream 1334 26960462 ~ 26960547 (+) True trnay-gua_28
unassigned_transcript_871 other downstream 2726 26961854 ~ 26961926 (+) True trnar-acg_25
unassigned_transcript_872 other downstream 3274 26962402 ~ 26962488 (+) True trnay-gua_29
unassigned_transcript_873 other downstream 4142 26963270 ~ 26963342 (+) True trnar-acg_26

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) unassigned_transcript_327 True 73 tRNA 0.53 2 NC_053118.1 8828683 ~ 8828771 (+)
tiger barb (Puntius tetrazona) unassigned_transcript_327 True 76 tRNA 0.59 1 NC_056702.1 20074090 ~ 20074165 (+)