RNA id: unassigned_transcript_874


Basic Information

Item Value
RNA id unassigned_transcript_874
length 73
RNA type tRNA
GC content 0.56
exon number 2
gene id trnay-gua_30
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26963812 ~ 26963898 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTTcgatagctcagttggtagagcggaggactgtagatccttaggtcgctggttcgactccggctcgaagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250602.1 lncRNA upstream 29461 26933340 ~ 26934351 (+) True LOC122342584
TU46384 lncRNA upstream 61807 26901712 ~ 26902005 (+) True G31424
TU46382 lncRNA upstream 95341 26868192 ~ 26868471 (+) True G31422
TU46380 lncRNA upstream 184206 26779293 ~ 26779606 (+) True G31420
XR_006250760.1 lncRNA upstream 193992 26768931 ~ 26769820 (+) True LOC122343359
TU46387 lncRNA downstream 29136 26993034 ~ 26993354 (+) True G31427
TU46388 lncRNA downstream 120419 27084317 ~ 27084707 (+) True G31428
TU46389 lncRNA downstream 233989 27197887 ~ 27198266 (+) True G31429
TU46401 lncRNA downstream 269198 27233096 ~ 27233432 (+) True G31438
TU46404 lncRNA downstream 333638 27297536 ~ 27369182 (+) False LOC122342372
XM_043236145.1 mRNA upstream 196639 26764953 ~ 26767173 (+) True LOC122342366
XM_043236142.1 mRNA upstream 536573 26382916 ~ 26427239 (+) True LOC122342362
XM_043236141.1 mRNA upstream 786194 26173194 ~ 26177618 (+) True LOC122342360
XM_043236137.1 mRNA upstream 986189 25974877 ~ 25977623 (+) True LOC122342357
XM_043236264.1 mRNA upstream 1235161 25711662 ~ 25728651 (+) True col9a3
XM_043236148.1 mRNA downstream 40803 27004701 ~ 27006306 (+) True LOC122342369
XM_043236149.1 mRNA downstream 243838 27207736 ~ 27210602 (+) True LOC122342370
XM_043236327.1 mRNA downstream 392914 27356812 ~ 27358163 (+) True LOC122342494
XM_043236150.1 mRNA downstream 400120 27364018 ~ 27371196 (+) True LOC122342372
XM_043236921.1 mRNA downstream 426441 27390339 ~ 27406088 (+) True LOC122342806
unassigned_transcript_873 other upstream 470 26963270 ~ 26963342 (+) True trnar-acg_26
unassigned_transcript_872 other upstream 1324 26962402 ~ 26962488 (+) True trnay-gua_29
unassigned_transcript_871 other upstream 1886 26961854 ~ 26961926 (+) True trnar-acg_25
unassigned_transcript_870 other upstream 3265 26960462 ~ 26960547 (+) True trnay-gua_28
unassigned_transcript_869 other upstream 3476 26960265 ~ 26960336 (+) True trnae-uuc_20
unassigned_transcript_876 other downstream 3247 26967145 ~ 26967217 (+) True trnar-acg_27
unassigned_transcript_877 other downstream 3605 26967503 ~ 26967574 (+) True trnae-uuc_21
unassigned_transcript_878 other downstream 3803 26967701 ~ 26967787 (+) True trnay-gua_31
unassigned_transcript_880 other downstream 6419 26970317 ~ 26970392 (+) True trnae-uuc_22
unassigned_transcript_881 other downstream 6620 26970518 ~ 26970603 (+) True trnay-gua_32