RNA id: unassigned_transcript_879



Basic Information


Item Value
RNA id unassigned_transcript_879
length 72
RNA type tRNA
GC content 0.65
exon number 1
gene id trnae-cuc_30
representative True

Chromosome Information


Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26969793 ~ 26969864 (-)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence


TCCCTGGTGGTCTAGTGGTTAGGATTCGGCGCTCTCACCGCCGcggcccgggttcgattcccggtcagggaa

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU46385 lncRNA downstream 67798 26901706 ~ 26901995 (-) True G31425
XR_006250601.1 lncRNA downstream 237167 26731660 ~ 26732626 (-) True LOC122342580
XR_006250546.1 lncRNA downstream 280341 26688613 ~ 26689452 (-) True LOC122342214
TU46371 lncRNA downstream 490860 26478716 ~ 26478933 (-) True G31413
TU46360 lncRNA downstream 536007 26428152 ~ 26433786 (-) True G31402
TU46386 lncRNA upstream 18723 26988587 ~ 26988954 (-) True G31426
TU46454 lncRNA upstream 391040 27360904 ~ 27406081 (-) False G31462
TU46455 lncRNA upstream 391040 27360904 ~ 27406081 (-) True G31462
TU46462 lncRNA upstream 403405 27373269 ~ 27392000 (-) True G31466
TU46470 lncRNA upstream 428905 27398769 ~ 27400876 (-) True G31472
XM_043236146.1 mRNA downstream 100645 26865773 ~ 26869148 (-) True LOC122342367
XM_043236144.1 mRNA downstream 276247 26692621 ~ 26693546 (-) True LOC122342364
XM_043236143.1 mRNA downstream 278116 26689984 ~ 26691677 (-) True LOC122342363
XM_043236140.1 mRNA downstream 943686 26023937 ~ 26026107 (-) True LOC122342359
XM_043236138.1 mRNA downstream 946549 26022144 ~ 26023244 (-) True LOC122342358
XM_043236245.1 mRNA upstream 413889 27383753 ~ 27389398 (-) True LOC122342454
XM_043238050.1 mRNA upstream 439224 27409088 ~ 27415650 (-) True flot1a
XM_043237703.1 mRNA upstream 977132 27946996 ~ 27951997 (-) True pdk2b
XM_043237697.1 mRNA upstream 996445 27966309 ~ 27969769 (-) False LOC122343310
XM_043237698.1 mRNA upstream 996445 27966309 ~ 27969320 (-) True LOC122343310
unassigned_transcript_875 other downstream 2745 26966978 ~ 26967048 (-) True trnak-cuu_2
unassigned_transcript_865 other downstream 11394 26958329 ~ 26958399 (-) True trnae-cuc_29
unassigned_transcript_862 other downstream 16878 26952844 ~ 26952915 (-) True trnae-cuc_28
unassigned_transcript_861 other downstream 30661 26939061 ~ 26939132 (-) True trnae-cuc_27
unassigned_transcript_859 other downstream 234195 26735512 ~ 26735598 (-) True trnay-gua_24
unassigned_transcript_882 other upstream 1880 26971744 ~ 26971815 (-) True trnae-cuc_31
unassigned_transcript_886 other upstream 3299 26973163 ~ 26973234 (-) True trnae-cuc_32
unassigned_transcript_899 other upstream 11789 26981653 ~ 26981724 (-) True trnae-cuc_33
unassigned_transcript_905 other upstream 14626 26984490 ~ 26984559 (-) True trnae-cuc_34
unassigned_transcript_912 other upstream 23876 26993740 ~ 26993811 (-) True trnae-cuc_35