RNA id: unassigned_transcript_884


Basic Information

Item Value
RNA id unassigned_transcript_884
length 72
RNA type tRNA
GC content 0.60
exon number 1
gene id trnae-uuc_23
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26972268 ~ 26972339 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCCATATGGTCTAGCGGTGAGGattcctggttttcacccaggCGGCCCGGGTTCGACTCCCGGTAtgggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250602.1 lncRNA upstream 37917 26933340 ~ 26934351 (+) True LOC122342584
TU46384 lncRNA upstream 70263 26901712 ~ 26902005 (+) True G31424
TU46382 lncRNA upstream 103797 26868192 ~ 26868471 (+) True G31422
TU46380 lncRNA upstream 192662 26779293 ~ 26779606 (+) True G31420
XR_006250760.1 lncRNA upstream 202448 26768931 ~ 26769820 (+) True LOC122343359
TU46387 lncRNA downstream 20695 26993034 ~ 26993354 (+) True G31427
TU46388 lncRNA downstream 111978 27084317 ~ 27084707 (+) True G31428
TU46389 lncRNA downstream 225548 27197887 ~ 27198266 (+) True G31429
TU46401 lncRNA downstream 260757 27233096 ~ 27233432 (+) True G31438
TU46404 lncRNA downstream 325197 27297536 ~ 27369182 (+) False LOC122342372
XM_043236145.1 mRNA upstream 205095 26764953 ~ 26767173 (+) True LOC122342366
XM_043236142.1 mRNA upstream 545029 26382916 ~ 26427239 (+) True LOC122342362
XM_043236141.1 mRNA upstream 794650 26173194 ~ 26177618 (+) True LOC122342360
XM_043236137.1 mRNA upstream 994645 25974877 ~ 25977623 (+) True LOC122342357
XM_043236264.1 mRNA upstream 1243617 25711662 ~ 25728651 (+) True col9a3
XM_043236148.1 mRNA downstream 32362 27004701 ~ 27006306 (+) True LOC122342369
XM_043236149.1 mRNA downstream 235397 27207736 ~ 27210602 (+) True LOC122342370
XM_043236327.1 mRNA downstream 384473 27356812 ~ 27358163 (+) True LOC122342494
XM_043236150.1 mRNA downstream 391679 27364018 ~ 27371196 (+) True LOC122342372
XM_043236921.1 mRNA downstream 418000 27390339 ~ 27406088 (+) True LOC122342806
unassigned_transcript_883 other upstream 282 26971912 ~ 26971986 (+) True trnar-acg_28
unassigned_transcript_881 other upstream 1665 26970518 ~ 26970603 (+) True trnay-gua_32
unassigned_transcript_880 other upstream 1876 26970317 ~ 26970392 (+) True trnae-uuc_22
unassigned_transcript_878 other upstream 4481 26967701 ~ 26967787 (+) True trnay-gua_31
unassigned_transcript_877 other upstream 4694 26967503 ~ 26967574 (+) True trnae-uuc_21
unassigned_transcript_885 other downstream 125 26972464 ~ 26972550 (+) True trnay-gua_33
unassigned_transcript_887 other downstream 993 26973332 ~ 26973404 (+) True trnar-acg_29
unassigned_transcript_888 other downstream 1537 26973876 ~ 26973965 (+) True trnay-gua_34
unassigned_transcript_889 other downstream 2407 26974746 ~ 26974818 (+) True trnar-acg_30
unassigned_transcript_890 other downstream 2763 26975102 ~ 26975173 (+) True trnae-uuc_24