RNA id: unassigned_transcript_890


Basic Information

Item Value
RNA id unassigned_transcript_890
length 72
RNA type tRNA
GC content 0.60
exon number 1
gene id trnae-uuc_24
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26975102 ~ 26975173 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCCATATGGTCTAGCGGTGAGGattcctggttttcacccaggCGGCCCGGGTTCGACTCCCGGTAtgggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250602.1 lncRNA upstream 40751 26933340 ~ 26934351 (+) True LOC122342584
TU46384 lncRNA upstream 73097 26901712 ~ 26902005 (+) True G31424
TU46382 lncRNA upstream 106631 26868192 ~ 26868471 (+) True G31422
TU46380 lncRNA upstream 195496 26779293 ~ 26779606 (+) True G31420
XR_006250760.1 lncRNA upstream 205282 26768931 ~ 26769820 (+) True LOC122343359
TU46387 lncRNA downstream 17861 26993034 ~ 26993354 (+) True G31427
TU46388 lncRNA downstream 109144 27084317 ~ 27084707 (+) True G31428
TU46389 lncRNA downstream 222714 27197887 ~ 27198266 (+) True G31429
TU46401 lncRNA downstream 257923 27233096 ~ 27233432 (+) True G31438
TU46404 lncRNA downstream 322363 27297536 ~ 27369182 (+) False LOC122342372
XM_043236145.1 mRNA upstream 207929 26764953 ~ 26767173 (+) True LOC122342366
XM_043236142.1 mRNA upstream 547863 26382916 ~ 26427239 (+) True LOC122342362
XM_043236141.1 mRNA upstream 797484 26173194 ~ 26177618 (+) True LOC122342360
XM_043236137.1 mRNA upstream 997479 25974877 ~ 25977623 (+) True LOC122342357
XM_043236264.1 mRNA upstream 1246451 25711662 ~ 25728651 (+) True col9a3
XM_043236148.1 mRNA downstream 29528 27004701 ~ 27006306 (+) True LOC122342369
XM_043236149.1 mRNA downstream 232563 27207736 ~ 27210602 (+) True LOC122342370
XM_043236327.1 mRNA downstream 381639 27356812 ~ 27358163 (+) True LOC122342494
XM_043236150.1 mRNA downstream 388845 27364018 ~ 27371196 (+) True LOC122342372
XM_043236921.1 mRNA downstream 415166 27390339 ~ 27406088 (+) True LOC122342806
unassigned_transcript_889 other upstream 284 26974746 ~ 26974818 (+) True trnar-acg_30
unassigned_transcript_888 other upstream 1137 26973876 ~ 26973965 (+) True trnay-gua_34
unassigned_transcript_887 other upstream 1698 26973332 ~ 26973404 (+) True trnar-acg_29
unassigned_transcript_885 other upstream 2552 26972464 ~ 26972550 (+) True trnay-gua_33
unassigned_transcript_884 other upstream 2763 26972268 ~ 26972339 (+) True trnae-uuc_23
unassigned_transcript_891 other downstream 1351 26976524 ~ 26976595 (+) True trnae-uuc_25
unassigned_transcript_892 other downstream 1547 26976720 ~ 26976806 (+) True trnay-gua_35
unassigned_transcript_893 other downstream 2414 26977587 ~ 26977659 (+) True trnar-acg_31
unassigned_transcript_894 other downstream 2768 26977941 ~ 26978012 (+) True trnae-uuc_26
unassigned_transcript_895 other downstream 3826 26978999 ~ 26979071 (+) True trnar-acg_32