RNA id: unassigned_transcript_892


Basic Information

Item Value
RNA id unassigned_transcript_892
length 73
RNA type tRNA
GC content 0.56
exon number 2
gene id trnay-gua_35
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26976720 ~ 26976806 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

CCTTcgatagctcagttggtagagcggaggactgtagatccttaggtcgctggttcgactccggctcgaagga

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250602.1 lncRNA upstream 42369 26933340 ~ 26934351 (+) True LOC122342584
TU46384 lncRNA upstream 74715 26901712 ~ 26902005 (+) True G31424
TU46382 lncRNA upstream 108249 26868192 ~ 26868471 (+) True G31422
TU46380 lncRNA upstream 197114 26779293 ~ 26779606 (+) True G31420
XR_006250760.1 lncRNA upstream 206900 26768931 ~ 26769820 (+) True LOC122343359
TU46387 lncRNA downstream 16228 26993034 ~ 26993354 (+) True G31427
TU46388 lncRNA downstream 107511 27084317 ~ 27084707 (+) True G31428
TU46389 lncRNA downstream 221081 27197887 ~ 27198266 (+) True G31429
TU46401 lncRNA downstream 256290 27233096 ~ 27233432 (+) True G31438
TU46404 lncRNA downstream 320730 27297536 ~ 27369182 (+) False LOC122342372
XM_043236145.1 mRNA upstream 209547 26764953 ~ 26767173 (+) True LOC122342366
XM_043236142.1 mRNA upstream 549481 26382916 ~ 26427239 (+) True LOC122342362
XM_043236141.1 mRNA upstream 799102 26173194 ~ 26177618 (+) True LOC122342360
XM_043236137.1 mRNA upstream 999097 25974877 ~ 25977623 (+) True LOC122342357
XM_043236264.1 mRNA upstream 1248069 25711662 ~ 25728651 (+) True col9a3
XM_043236148.1 mRNA downstream 27895 27004701 ~ 27006306 (+) True LOC122342369
XM_043236149.1 mRNA downstream 230930 27207736 ~ 27210602 (+) True LOC122342370
XM_043236327.1 mRNA downstream 380006 27356812 ~ 27358163 (+) True LOC122342494
XM_043236150.1 mRNA downstream 387212 27364018 ~ 27371196 (+) True LOC122342372
XM_043236921.1 mRNA downstream 413533 27390339 ~ 27406088 (+) True LOC122342806
unassigned_transcript_891 other upstream 125 26976524 ~ 26976595 (+) True trnae-uuc_25
unassigned_transcript_890 other upstream 1547 26975102 ~ 26975173 (+) True trnae-uuc_24
unassigned_transcript_889 other upstream 1902 26974746 ~ 26974818 (+) True trnar-acg_30
unassigned_transcript_888 other upstream 2755 26973876 ~ 26973965 (+) True trnay-gua_34
unassigned_transcript_887 other upstream 3316 26973332 ~ 26973404 (+) True trnar-acg_29
unassigned_transcript_893 other downstream 781 26977587 ~ 26977659 (+) True trnar-acg_31
unassigned_transcript_894 other downstream 1135 26977941 ~ 26978012 (+) True trnae-uuc_26
unassigned_transcript_895 other downstream 2193 26978999 ~ 26979071 (+) True trnar-acg_32
unassigned_transcript_896 other downstream 2542 26979348 ~ 26979419 (+) True trnae-uuc_27
unassigned_transcript_897 other downstream 3605 26980411 ~ 26980483 (+) True trnar-acg_33