RNA id: unassigned_transcript_896


Basic Information

Item Value
RNA id unassigned_transcript_896
length 72
RNA type tRNA
GC content 0.60
exon number 1
gene id trnae-uuc_27
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26979348 ~ 26979419 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCCATATGGTCTAGCGGTGAGGattcctggttttcacccaggCGGCCCGGGTTCGACTCCCGGTAtgggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
XR_006250602.1 lncRNA upstream 44997 26933340 ~ 26934351 (+) True LOC122342584
TU46384 lncRNA upstream 77343 26901712 ~ 26902005 (+) True G31424
TU46382 lncRNA upstream 110877 26868192 ~ 26868471 (+) True G31422
TU46380 lncRNA upstream 199742 26779293 ~ 26779606 (+) True G31420
XR_006250760.1 lncRNA upstream 209528 26768931 ~ 26769820 (+) True LOC122343359
TU46387 lncRNA downstream 13615 26993034 ~ 26993354 (+) True G31427
TU46388 lncRNA downstream 104898 27084317 ~ 27084707 (+) True G31428
TU46389 lncRNA downstream 218468 27197887 ~ 27198266 (+) True G31429
TU46401 lncRNA downstream 253677 27233096 ~ 27233432 (+) True G31438
TU46404 lncRNA downstream 318117 27297536 ~ 27369182 (+) False LOC122342372
XM_043236145.1 mRNA upstream 212175 26764953 ~ 26767173 (+) True LOC122342366
XM_043236142.1 mRNA upstream 552109 26382916 ~ 26427239 (+) True LOC122342362
XM_043236141.1 mRNA upstream 801730 26173194 ~ 26177618 (+) True LOC122342360
XM_043236137.1 mRNA upstream 1001725 25974877 ~ 25977623 (+) True LOC122342357
XM_043236264.1 mRNA upstream 1250697 25711662 ~ 25728651 (+) True col9a3
XM_043236148.1 mRNA downstream 25282 27004701 ~ 27006306 (+) True LOC122342369
XM_043236149.1 mRNA downstream 228317 27207736 ~ 27210602 (+) True LOC122342370
XM_043236327.1 mRNA downstream 377393 27356812 ~ 27358163 (+) True LOC122342494
XM_043236150.1 mRNA downstream 384599 27364018 ~ 27371196 (+) True LOC122342372
XM_043236921.1 mRNA downstream 410920 27390339 ~ 27406088 (+) True LOC122342806
unassigned_transcript_895 other upstream 277 26978999 ~ 26979071 (+) True trnar-acg_32
unassigned_transcript_894 other upstream 1336 26977941 ~ 26978012 (+) True trnae-uuc_26
unassigned_transcript_893 other upstream 1689 26977587 ~ 26977659 (+) True trnar-acg_31
unassigned_transcript_892 other upstream 2542 26976720 ~ 26976806 (+) True trnay-gua_35
unassigned_transcript_891 other upstream 2753 26976524 ~ 26976595 (+) True trnae-uuc_25
unassigned_transcript_897 other downstream 992 26980411 ~ 26980483 (+) True trnar-acg_33
unassigned_transcript_898 other downstream 1535 26980954 ~ 26981040 (+) True trnay-gua_36
unassigned_transcript_900 other downstream 2403 26981822 ~ 26981894 (+) True trnar-acg_34
unassigned_transcript_901 other downstream 2757 26982176 ~ 26982246 (+) True trnae-uuc_28
unassigned_transcript_902 other downstream 2953 26982372 ~ 26982458 (+) True trnay-gua_37