RNA id: unassigned_transcript_917


Basic Information

Item Value
RNA id unassigned_transcript_917
length 72
RNA type tRNA
GC content 0.60
exon number 1
gene id trnae-uuc_31
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 26997589 ~ 26997660 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

TCCCATATGGTCTAGCGGTGAGGattcctggttttcacccaggCGGCCCGGGTTCGACTCCCGGTAtgggaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46387 lncRNA upstream 4235 26993034 ~ 26993354 (+) True G31427
XR_006250602.1 lncRNA upstream 63238 26933340 ~ 26934351 (+) True LOC122342584
TU46384 lncRNA upstream 95584 26901712 ~ 26902005 (+) True G31424
TU46382 lncRNA upstream 129118 26868192 ~ 26868471 (+) True G31422
TU46380 lncRNA upstream 217983 26779293 ~ 26779606 (+) True G31420
TU46388 lncRNA downstream 86657 27084317 ~ 27084707 (+) True G31428
TU46389 lncRNA downstream 200227 27197887 ~ 27198266 (+) True G31429
TU46401 lncRNA downstream 235436 27233096 ~ 27233432 (+) True G31438
TU46404 lncRNA downstream 299876 27297536 ~ 27369182 (+) False LOC122342372
TU46414 lncRNA downstream 363183 27360843 ~ 27406082 (+) False LOC122342806
XM_043236145.1 mRNA upstream 230416 26764953 ~ 26767173 (+) True LOC122342366
XM_043236142.1 mRNA upstream 570350 26382916 ~ 26427239 (+) True LOC122342362
XM_043236141.1 mRNA upstream 819971 26173194 ~ 26177618 (+) True LOC122342360
XM_043236137.1 mRNA upstream 1019966 25974877 ~ 25977623 (+) True LOC122342357
XM_043236264.1 mRNA upstream 1268938 25711662 ~ 25728651 (+) True col9a3
XM_043236148.1 mRNA downstream 7041 27004701 ~ 27006306 (+) True LOC122342369
XM_043236149.1 mRNA downstream 210076 27207736 ~ 27210602 (+) True LOC122342370
XM_043236327.1 mRNA downstream 359152 27356812 ~ 27358163 (+) True LOC122342494
XM_043236150.1 mRNA downstream 366358 27364018 ~ 27371196 (+) True LOC122342372
XM_043236921.1 mRNA downstream 392679 27390339 ~ 27406088 (+) True LOC122342806
unassigned_transcript_916 other upstream 285 26997232 ~ 26997304 (+) True trnar-acg_38
unassigned_transcript_914 other upstream 3048 26994454 ~ 26994541 (+) True trnay-gua_41
unassigned_transcript_913 other upstream 3608 26993909 ~ 26993981 (+) True trnar-acg_37
unassigned_transcript_911 other upstream 9465 26988038 ~ 26988124 (+) True trnay-gua_40
unassigned_transcript_910 other upstream 10887 26986616 ~ 26986702 (+) True trnay-gua_39
unassigned_transcript_918 other downstream 126 26997786 ~ 26997872 (+) True trnay-gua_42
unassigned_transcript_919 other downstream 2559 27000219 ~ 27000291 (+) True trnar-acg_39
unassigned_transcript_920 other downstream 3109 27000769 ~ 27000855 (+) True trnay-gua_43
unassigned_transcript_921 other downstream 10961 27008621 ~ 27008702 (+) True trnas-aga_109
unassigned_transcript_922 other downstream 13314 27010974 ~ 27011055 (+) True trnas-uga_107