RNA id: unassigned_transcript_921


Basic Information

Item Value
RNA id unassigned_transcript_921
length 82
RNA type tRNA
GC content 0.57
exon number 1
gene id trnas-aga_109
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 27008621 ~ 27008702 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtagtcgtggccgagaggttaaggcgatggactagaaatccattggggtctccccgcgcaagttcgaatcctgccgactacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46387 lncRNA upstream 15267 26993034 ~ 26993354 (+) True G31427
XR_006250602.1 lncRNA upstream 74270 26933340 ~ 26934351 (+) True LOC122342584
TU46384 lncRNA upstream 106616 26901712 ~ 26902005 (+) True G31424
TU46382 lncRNA upstream 140150 26868192 ~ 26868471 (+) True G31422
TU46380 lncRNA upstream 229015 26779293 ~ 26779606 (+) True G31420
TU46388 lncRNA downstream 75615 27084317 ~ 27084707 (+) True G31428
TU46389 lncRNA downstream 189185 27197887 ~ 27198266 (+) True G31429
TU46401 lncRNA downstream 224394 27233096 ~ 27233432 (+) True G31438
TU46404 lncRNA downstream 288834 27297536 ~ 27369182 (+) False LOC122342372
TU46414 lncRNA downstream 352141 27360843 ~ 27406082 (+) False LOC122342806
XM_043236148.1 mRNA upstream 2315 27004701 ~ 27006306 (+) True LOC122342369
XM_043236145.1 mRNA upstream 241448 26764953 ~ 26767173 (+) True LOC122342366
XM_043236142.1 mRNA upstream 581382 26382916 ~ 26427239 (+) True LOC122342362
XM_043236141.1 mRNA upstream 831003 26173194 ~ 26177618 (+) True LOC122342360
XM_043236137.1 mRNA upstream 1030998 25974877 ~ 25977623 (+) True LOC122342357
XM_043236149.1 mRNA downstream 199034 27207736 ~ 27210602 (+) True LOC122342370
XM_043236327.1 mRNA downstream 348110 27356812 ~ 27358163 (+) True LOC122342494
XM_043236150.1 mRNA downstream 355316 27364018 ~ 27371196 (+) True LOC122342372
XM_043236921.1 mRNA downstream 381637 27390339 ~ 27406088 (+) True LOC122342806
XM_043236927.1 mRNA downstream 381637 27390339 ~ 27406088 (+) False LOC122342806
unassigned_transcript_920 other upstream 7766 27000769 ~ 27000855 (+) True trnay-gua_43
unassigned_transcript_919 other upstream 8330 27000219 ~ 27000291 (+) True trnar-acg_39
unassigned_transcript_918 other upstream 10749 26997786 ~ 26997872 (+) True trnay-gua_42
unassigned_transcript_917 other upstream 10961 26997589 ~ 26997660 (+) True trnae-uuc_31
unassigned_transcript_916 other upstream 11317 26997232 ~ 26997304 (+) True trnar-acg_38
unassigned_transcript_922 other downstream 2272 27010974 ~ 27011055 (+) True trnas-uga_107
unassigned_transcript_923 other downstream 4930 27013632 ~ 27013713 (+) True trnas-uga_108
unassigned_transcript_924 other downstream 6437 27015139 ~ 27015211 (+) True trnak-uuu_101
unassigned_transcript_925 other downstream 7249 27015951 ~ 27016031 (+) True trnas-aga_110
unassigned_transcript_926 other downstream 9913 27018615 ~ 27018696 (+) True trnas-aga_111