RNA id: unassigned_transcript_922


Basic Information

Item Value
RNA id unassigned_transcript_922
length 82
RNA type tRNA
GC content 0.60
exon number 1
gene id trnas-uga_107
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 27010974 ~ 27011055 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtagtcgtggccgagaggttaaggcgatggacttgaaatccattggggtctccccgcgcaggttcgaaccctgccgactacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46387 lncRNA upstream 17620 26993034 ~ 26993354 (+) True G31427
XR_006250602.1 lncRNA upstream 76623 26933340 ~ 26934351 (+) True LOC122342584
TU46384 lncRNA upstream 108969 26901712 ~ 26902005 (+) True G31424
TU46382 lncRNA upstream 142503 26868192 ~ 26868471 (+) True G31422
TU46380 lncRNA upstream 231368 26779293 ~ 26779606 (+) True G31420
TU46388 lncRNA downstream 73262 27084317 ~ 27084707 (+) True G31428
TU46389 lncRNA downstream 186832 27197887 ~ 27198266 (+) True G31429
TU46401 lncRNA downstream 222041 27233096 ~ 27233432 (+) True G31438
TU46404 lncRNA downstream 286481 27297536 ~ 27369182 (+) False LOC122342372
TU46414 lncRNA downstream 349788 27360843 ~ 27406082 (+) False LOC122342806
XM_043236148.1 mRNA upstream 4668 27004701 ~ 27006306 (+) True LOC122342369
XM_043236145.1 mRNA upstream 243801 26764953 ~ 26767173 (+) True LOC122342366
XM_043236142.1 mRNA upstream 583735 26382916 ~ 26427239 (+) True LOC122342362
XM_043236141.1 mRNA upstream 833356 26173194 ~ 26177618 (+) True LOC122342360
XM_043236137.1 mRNA upstream 1033351 25974877 ~ 25977623 (+) True LOC122342357
XM_043236149.1 mRNA downstream 196681 27207736 ~ 27210602 (+) True LOC122342370
XM_043236327.1 mRNA downstream 345757 27356812 ~ 27358163 (+) True LOC122342494
XM_043236150.1 mRNA downstream 352963 27364018 ~ 27371196 (+) True LOC122342372
XM_043236921.1 mRNA downstream 379284 27390339 ~ 27406088 (+) True LOC122342806
XM_043236927.1 mRNA downstream 379284 27390339 ~ 27406088 (+) False LOC122342806
unassigned_transcript_921 other upstream 2272 27008621 ~ 27008702 (+) True trnas-aga_109
unassigned_transcript_920 other upstream 10119 27000769 ~ 27000855 (+) True trnay-gua_43
unassigned_transcript_919 other upstream 10683 27000219 ~ 27000291 (+) True trnar-acg_39
unassigned_transcript_918 other upstream 13102 26997786 ~ 26997872 (+) True trnay-gua_42
unassigned_transcript_917 other upstream 13314 26997589 ~ 26997660 (+) True trnae-uuc_31
unassigned_transcript_923 other downstream 2577 27013632 ~ 27013713 (+) True trnas-uga_108
unassigned_transcript_924 other downstream 4084 27015139 ~ 27015211 (+) True trnak-uuu_101
unassigned_transcript_925 other downstream 4896 27015951 ~ 27016031 (+) True trnas-aga_110
unassigned_transcript_926 other downstream 7560 27018615 ~ 27018696 (+) True trnas-aga_111
unassigned_transcript_927 other downstream 7903 27018958 ~ 27019037 (+) True trnas-uga_109