RNA id: unassigned_transcript_925


Basic Information

Item Value
RNA id unassigned_transcript_925
length 81
RNA type tRNA
GC content 0.57
exon number 1
gene id trnas-aga_110
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 27015951 ~ 27016031 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtagtcgtggccgagtggttaaggcgatggactagaaatccattggggctCCTCGCGcaagttcgaatcctgccgactacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46387 lncRNA upstream 22597 26993034 ~ 26993354 (+) True G31427
XR_006250602.1 lncRNA upstream 81600 26933340 ~ 26934351 (+) True LOC122342584
TU46384 lncRNA upstream 113946 26901712 ~ 26902005 (+) True G31424
TU46382 lncRNA upstream 147480 26868192 ~ 26868471 (+) True G31422
TU46380 lncRNA upstream 236345 26779293 ~ 26779606 (+) True G31420
TU46388 lncRNA downstream 68286 27084317 ~ 27084707 (+) True G31428
TU46389 lncRNA downstream 181856 27197887 ~ 27198266 (+) True G31429
TU46401 lncRNA downstream 217065 27233096 ~ 27233432 (+) True G31438
TU46404 lncRNA downstream 281505 27297536 ~ 27369182 (+) False LOC122342372
TU46414 lncRNA downstream 344812 27360843 ~ 27406082 (+) False LOC122342806
XM_043236148.1 mRNA upstream 9645 27004701 ~ 27006306 (+) True LOC122342369
XM_043236145.1 mRNA upstream 248778 26764953 ~ 26767173 (+) True LOC122342366
XM_043236142.1 mRNA upstream 588712 26382916 ~ 26427239 (+) True LOC122342362
XM_043236141.1 mRNA upstream 838333 26173194 ~ 26177618 (+) True LOC122342360
XM_043236137.1 mRNA upstream 1038328 25974877 ~ 25977623 (+) True LOC122342357
XM_043236149.1 mRNA downstream 191705 27207736 ~ 27210602 (+) True LOC122342370
XM_043236327.1 mRNA downstream 340781 27356812 ~ 27358163 (+) True LOC122342494
XM_043236150.1 mRNA downstream 347987 27364018 ~ 27371196 (+) True LOC122342372
XM_043236921.1 mRNA downstream 374308 27390339 ~ 27406088 (+) True LOC122342806
XM_043236927.1 mRNA downstream 374308 27390339 ~ 27406088 (+) False LOC122342806
unassigned_transcript_924 other upstream 740 27015139 ~ 27015211 (+) True trnak-uuu_101
unassigned_transcript_923 other upstream 2238 27013632 ~ 27013713 (+) True trnas-uga_108
unassigned_transcript_922 other upstream 4896 27010974 ~ 27011055 (+) True trnas-uga_107
unassigned_transcript_921 other upstream 7249 27008621 ~ 27008702 (+) True trnas-aga_109
unassigned_transcript_920 other upstream 15096 27000769 ~ 27000855 (+) True trnay-gua_43
unassigned_transcript_926 other downstream 2584 27018615 ~ 27018696 (+) True trnas-aga_111
unassigned_transcript_927 other downstream 2927 27018958 ~ 27019037 (+) True trnas-uga_109
unassigned_transcript_928 other downstream 4434 27020465 ~ 27020537 (+) True trnak-uuu_102
unassigned_transcript_929 other downstream 10612 27026643 ~ 27026728 (+) True trnal-aag_29
unassigned_transcript_930 other downstream 41347 27057378 ~ 27057460 (+) True trnas-uga_110