RNA id: unassigned_transcript_927


Basic Information

Item Value
RNA id unassigned_transcript_927
length 80
RNA type tRNA
GC content 0.59
exon number 1
gene id trnas-uga_109
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 27018958 ~ 27019037 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtagtcgtggccgagaggttaaggcgatggacttgaaatccattgggtctcccgcgcaggttcgaaccctgccgactacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46387 lncRNA upstream 25604 26993034 ~ 26993354 (+) True G31427
XR_006250602.1 lncRNA upstream 84607 26933340 ~ 26934351 (+) True LOC122342584
TU46384 lncRNA upstream 116953 26901712 ~ 26902005 (+) True G31424
TU46382 lncRNA upstream 150487 26868192 ~ 26868471 (+) True G31422
TU46380 lncRNA upstream 239352 26779293 ~ 26779606 (+) True G31420
TU46388 lncRNA downstream 65280 27084317 ~ 27084707 (+) True G31428
TU46389 lncRNA downstream 178850 27197887 ~ 27198266 (+) True G31429
TU46401 lncRNA downstream 214059 27233096 ~ 27233432 (+) True G31438
TU46404 lncRNA downstream 278499 27297536 ~ 27369182 (+) False LOC122342372
TU46414 lncRNA downstream 341806 27360843 ~ 27406082 (+) False LOC122342806
XM_043236148.1 mRNA upstream 12652 27004701 ~ 27006306 (+) True LOC122342369
XM_043236145.1 mRNA upstream 251785 26764953 ~ 26767173 (+) True LOC122342366
XM_043236142.1 mRNA upstream 591719 26382916 ~ 26427239 (+) True LOC122342362
XM_043236141.1 mRNA upstream 841340 26173194 ~ 26177618 (+) True LOC122342360
XM_043236137.1 mRNA upstream 1041335 25974877 ~ 25977623 (+) True LOC122342357
XM_043236149.1 mRNA downstream 188699 27207736 ~ 27210602 (+) True LOC122342370
XM_043236327.1 mRNA downstream 337775 27356812 ~ 27358163 (+) True LOC122342494
XM_043236150.1 mRNA downstream 344981 27364018 ~ 27371196 (+) True LOC122342372
XM_043236921.1 mRNA downstream 371302 27390339 ~ 27406088 (+) True LOC122342806
XM_043236927.1 mRNA downstream 371302 27390339 ~ 27406088 (+) False LOC122342806
unassigned_transcript_926 other upstream 262 27018615 ~ 27018696 (+) True trnas-aga_111
unassigned_transcript_925 other upstream 2927 27015951 ~ 27016031 (+) True trnas-aga_110
unassigned_transcript_924 other upstream 3747 27015139 ~ 27015211 (+) True trnak-uuu_101
unassigned_transcript_923 other upstream 5245 27013632 ~ 27013713 (+) True trnas-uga_108
unassigned_transcript_922 other upstream 7903 27010974 ~ 27011055 (+) True trnas-uga_107
unassigned_transcript_928 other downstream 1428 27020465 ~ 27020537 (+) True trnak-uuu_102
unassigned_transcript_929 other downstream 7606 27026643 ~ 27026728 (+) True trnal-aag_29
unassigned_transcript_930 other downstream 38341 27057378 ~ 27057460 (+) True trnas-uga_110
unassigned_transcript_931 other downstream 40997 27060034 ~ 27060115 (+) True trnas-uga_111
unassigned_transcript_932 other downstream 43627 27062664 ~ 27062744 (+) True trnas-uga_112