RNA id: unassigned_transcript_931


Basic Information

Item Value
RNA id unassigned_transcript_931
length 82
RNA type tRNA
GC content 0.60
exon number 1
gene id trnas-uga_111
representative True

Chromosome Information

Item Value
chromosome id NC_056702.1
NCBI id CM032071.1
chromosome length 29200999
location 27060034 ~ 27060115 (+)
genome version ASM1883169v1_2021_tiger_barb_Genome
species tiger barb
(Puntius tetrazona)

Sequence

gtagtcgtggccgagaggttaaggcgatggacttgaaatccattggggtctcccagcgcgggttcgaaccctgccgactacg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU46387 lncRNA upstream 66680 26993034 ~ 26993354 (+) True G31427
XR_006250602.1 lncRNA upstream 125683 26933340 ~ 26934351 (+) True LOC122342584
TU46384 lncRNA upstream 158029 26901712 ~ 26902005 (+) True G31424
TU46382 lncRNA upstream 191563 26868192 ~ 26868471 (+) True G31422
TU46380 lncRNA upstream 280428 26779293 ~ 26779606 (+) True G31420
TU46388 lncRNA downstream 24202 27084317 ~ 27084707 (+) True G31428
TU46389 lncRNA downstream 137772 27197887 ~ 27198266 (+) True G31429
TU46401 lncRNA downstream 172981 27233096 ~ 27233432 (+) True G31438
TU46404 lncRNA downstream 237421 27297536 ~ 27369182 (+) False LOC122342372
TU46414 lncRNA downstream 300728 27360843 ~ 27406082 (+) False LOC122342806
XM_043236148.1 mRNA upstream 53728 27004701 ~ 27006306 (+) True LOC122342369
XM_043236145.1 mRNA upstream 292861 26764953 ~ 26767173 (+) True LOC122342366
XM_043236142.1 mRNA upstream 632795 26382916 ~ 26427239 (+) True LOC122342362
XM_043236141.1 mRNA upstream 882416 26173194 ~ 26177618 (+) True LOC122342360
XM_043236137.1 mRNA upstream 1082411 25974877 ~ 25977623 (+) True LOC122342357
XM_043236149.1 mRNA downstream 147621 27207736 ~ 27210602 (+) True LOC122342370
XM_043236327.1 mRNA downstream 296697 27356812 ~ 27358163 (+) True LOC122342494
XM_043236150.1 mRNA downstream 303903 27364018 ~ 27371196 (+) True LOC122342372
XM_043236921.1 mRNA downstream 330224 27390339 ~ 27406088 (+) True LOC122342806
XM_043236927.1 mRNA downstream 330224 27390339 ~ 27406088 (+) False LOC122342806
unassigned_transcript_930 other upstream 2574 27057378 ~ 27057460 (+) True trnas-uga_110
unassigned_transcript_929 other upstream 33306 27026643 ~ 27026728 (+) True trnal-aag_29
unassigned_transcript_928 other upstream 39497 27020465 ~ 27020537 (+) True trnak-uuu_102
unassigned_transcript_927 other upstream 40997 27018958 ~ 27019037 (+) True trnas-uga_109
unassigned_transcript_926 other upstream 41338 27018615 ~ 27018696 (+) True trnas-aga_111
unassigned_transcript_932 other downstream 2549 27062664 ~ 27062744 (+) True trnas-uga_112
unassigned_transcript_933 other downstream 5180 27065295 ~ 27065376 (+) True trnas-uga_113
unassigned_transcript_934 other downstream 7478 27067593 ~ 27067674 (+) True trnas-aga_112
unassigned_transcript_935 other downstream 10126 27070241 ~ 27070321 (+) True trnas-aga_113
unassigned_transcript_936 other downstream 10468 27070583 ~ 27070663 (+) True trnas-uga_114